RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FSD2A1L4K1 749 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 CPA1P15085 419 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 HLFQ16534 295 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 MCTP1Q6DN14 999 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 RUFY3Q7L099 469 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 ZNF589Q86UQ0 364 aaPredicted RBP25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 ZBTB38Q8NAP3 1195 aaPredicted RBP25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 ZSWIM6Q9HCJ5 1215 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 ZBTB1Q9Y2K1 713 aa25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 THRAP3Q9Y2W1 955 aaKnown RBP25.38■■□□□ 1.65
CCDC88B-208ENST00000492980 FAM89AQ96GI7 184 aa25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 ARXQ96QS3 562 aa25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 KCNJ4P48050 445 aa25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 L1TD1Q5T7N2 865 aaKnown RBP25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 NEUROD6Q96NK8 337 aa25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 PUS3Q9BZE2 481 aaKnown RBP25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 LIMCH1Q9UPQ0 1083 aa25.37■■□□□ 1.65
CCDC88B-208ENST00000492980 BRD1O95696 1058 aa25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 ZKSCAN1P17029 563 aaPredicted RBP25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 SLC27A2O14975 620 aa25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 TIMM10P62072 90 aa25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 CCDC57Q2TAC2 916 aa25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 VPS53Q5VIR6 699 aa25.36■■□□□ 1.65
CCDC88B-208ENST00000492980 RPAP1Q9BWH6 1393 aaPredicted RBP25.35■■□□□ 1.65
CCDC88B-208ENST00000492980 HSP90AB3PQ58FF7 597 aa25.35■■□□□ 1.65
CCDC88B-208ENST00000492980 NLRP10Q86W26 655 aa25.35■■□□□ 1.65
CCDC88B-208ENST00000492980 NUP98P52948 1817 aa25.35■■□□□ 1.65
CCDC88B-208ENST00000492980 CDHR2Q9BYE9 1310 aa25.35■■□□□ 1.65
CCDC88B-208ENST00000492980 GOLGA6L3A6NEY3 463 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 CSF1RP07333 972 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 DDB1Q16531 1140 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 PDRG1Q9NUG6 133 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 CCDC9Q9Y3X0 531 aaKnown RBP25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 CYP46A1Q9Y6A2 500 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 TAF5LO75529 589 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 DDX46Q7L014 1031 aaKnown RBP25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 FBXO3Q9UK99 471 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 NWD2Q9ULI1 1742 aa25.34■■□□□ 1.65
CCDC88B-208ENST00000492980 GPTP24298 496 aa25.33■■□□□ 1.65
CCDC88B-208ENST00000492980 KBTBD3Q8NAB2 608 aa25.33■■□□□ 1.65
CCDC88B-208ENST00000492980 LMBRD1Q9NUN5 540 aa25.33■■□□□ 1.65
CCDC88B-208ENST00000492980 BRPF3Q9ULD4 1205 aa25.33■■□□□ 1.65
CCDC88B-208ENST00000492980 PALLDQ8WX93 1383 aa25.33■■□□□ 1.65
CCDC88B-208ENST00000492980 A0A1B0GUL7 405 aa25.33■■□□□ 1.64
CCDC88B-208ENST00000492980 KLHL40Q2TBA0 621 aa25.32■■□□□ 1.64
CCDC88B-208ENST00000492980 LARP6Q9BRS8 491 aaKnown RBP25.32■■□□□ 1.64
CCDC88B-208ENST00000492980 CHGBP05060 677 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 IL6STP40189 918 aaPredicted RBP25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 RNF20Q5VTR2 975 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 CEP126Q9P2H0 1117 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 SPATA31A5Q5VU36 1347 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 SPATA31A7Q8IWB4 1347 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 SPEF2Q9C093 1822 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 FOXD4L5Q5VV16 416 aaPredicted RBP25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 SYNE4Q8N205 404 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 FOXD4L4Q8WXT5 416 aaPredicted RBP25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 CCDC85AQ96PX6 553 aaPredicted RBP25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 PAG1Q9NWQ8 432 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 MYH3P11055 1940 aa25.31■■□□□ 1.64
CCDC88B-208ENST00000492980 USPL1Q5W0Q7 1092 aa25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 DDX49Q9Y6V7 483 aaKnown RBP25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 NUTM2BA6NNL0 878 aaPredicted RBP25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 NUTM2EB1AL46 878 aaPredicted RBP25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 ERVV-1B6SEH8 477 aa25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 LARGE1O95461 756 aa25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 PSMA5P28066 241 aa25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 NUTM2AQ8IVF1 878 aaPredicted RBP25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 HMG20BQ9P0W2 317 aa25.3■■□□□ 1.64
CCDC88B-208ENST00000492980 SLIT2O94813 1529 aa25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 GOLIM4O00461 696 aa25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 IFIT5Q13325 482 aaKnown RBP25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 MCMDC2Q4G0Z9 681 aa25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 MARCH10Q8NA82 808 aaPredicted RBP25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 SEC62Q99442 399 aaKnown RBP25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 SH3TC1Q8TE82 1336 aa25.29■■□□□ 1.64
CCDC88B-208ENST00000492980 DZIP3Q86Y13 1208 aaKnown RBP25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 CHAMP1Q96JM3 812 aa25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 TAF6LQ9Y6J9 622 aa25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 TSGA10IPQ3SY00 556 aa25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 CCDC129Q6ZRS4 1044 aa25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 ZSCAN31Q96LW9 406 aaPredicted RBP25.28■■□□□ 1.64
CCDC88B-208ENST00000492980 TAF7LQ5H9L4 462 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 TICAM2Q86XR7 235 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 ACSBG1Q96GR2 724 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 TBC1D2BQ9UPU7 963 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 RREB1Q92766 1687 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 RIC1Q4ADV7 1423 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 CICQ96RK0 1608 aaPredicted RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 IFIT1P09914 478 aaKnown RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 COL9A3Q14050 684 aaPredicted RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 TTLL11Q8NHH1 800 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 SH2B1Q9NRF2 756 aaPredicted RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 ISY1Q9ULR0 285 aaKnown RBP25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 AKAP2Q9Y2D5 859 aa25.27■■□□□ 1.64
CCDC88B-208ENST00000492980 CTSWP56202 376 aa25.26■■□□□ 1.63
CCDC88B-208ENST00000492980 PRPF40AO75400 957 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 XRCC6P12956 609 aaKnown RBP eCLIP25.25■■□□□ 1.63
CCDC88B-208ENST00000492980 BARGINQ6ZT62 677 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms