RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 IFNL3Q8IZI9 196 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 GAS2L2Q8NHY3 880 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SMARCC1Q92922 1105 aaPredicted RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 E2F7Q96AV8 911 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 TBC1D20Q96BZ9 403 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 ASB16Q96NS5 453 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SERINC2Q96SA4 455 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 ZNF700Q9H0M5 742 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 C12orf49Q9H741 205 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 PRM3Q9NNZ6 103 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 HOMER2Q9NSB8 354 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 PRRT4C9JH25 899 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SOCS7O14512 581 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 ORC4O43929 436 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 TPM2P07951 284 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SSTR3P32745 418 aaPredicted RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 BCAMP50895 628 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SEC13P55735 322 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 SLFNL1Q499Z3 407 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 ZNF394Q53GI3 561 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 DNTTIP2Q5QJE6 756 aaKnown RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 PPP2R2DQ66LE6 453 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 PDXDC2PQ6P474 469 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 HDGFL2Q7Z4V5 671 aaPredicted RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 MCF2L2Q86YR7 1114 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 IQCF2Q8IXL9 164 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 CLASRPQ8N2M8 674 aaKnown RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 MRPL50Q8N5N7 158 aaKnown RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 NELL1Q92832 810 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 RNF34Q969K3 372 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 PAWRQ96IZ0 340 aaKnown RBP5.08□□□□□ -1.6
BRCA1-220ENST00000492859 TAGLN3Q9UI15 199 aa5.08□□□□□ -1.6
BRCA1-220ENST00000492859 KIF5CO60282 957 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 NFX1Q12986 1120 aaKnown RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 BRDTQ58F21 947 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 SPECC1Q5M775 1068 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 LMBRD2Q68DH5 695 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 ZCCHC8Q6NZY4 707 aaKnown RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 C16orf54Q6UWD8 224 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 THSD4Q6ZMP0 1018 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 WAPLQ7Z5K2 1190 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 ARHGEF25Q86VW2 580 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 WNT2BQ93097 391 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 TRIM52Q96A61 297 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 ZNF496Q96IT1 587 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 SLX1AQ9BQ83 275 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 POLR3CQ9BUI4 534 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 XPO4Q9C0E2 1151 aaKnown RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 RABGEF1Q9UJ41 708 aa5.07□□□□□ -1.6
BRCA1-220ENST00000492859 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-220ENST00000492859 TRIM6-TRIM34B2RNG4 842 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 GOLGA6L22H0YM25 854 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 hCG_1984214I3L0E3 225 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 FIBPO43427 364 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 HTATSF1O43719 755 aaKnown RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 DIAPH1O60610 1272 aaKnown RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 TPPPO94811 219 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 NEFHP12036 1026 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 RPL17P18621 184 aaKnown RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 RASA1P20936 1047 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 MAPK1P28482 360 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 ABCD1P33897 745 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 VAC14Q08AM6 782 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 PTK7Q13308 1070 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 SERINC3Q13530 473 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 HIC1Q14526 733 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 ALFQ53S48 1182 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 KANK4Q5T7N3 995 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 JAKMIP3Q5VZ66 844 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 NUTM2GQ5VZR2 741 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 TBC1D9Q6ZT07 1266 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 C14orf80Q86SX3 495 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 MICALL1Q8N3F8 863 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 APPL2Q8NEU8 664 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 TAF4BQ92750 862 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 VMP1Q96GC9 406 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 FAM161BQ96MY7 647 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 IWS1Q96ST2 819 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 DUSP9Q99956 384 aaKnown RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 RIC8AQ9NPQ8 531 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 NPDC1Q9NQX5 325 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 LUZP4Q9P127 313 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 HCSTQ9UBK5 93 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 PARP2Q9UGN5 583 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 FBXO2Q9UK22 296 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-220ENST00000492859 RABL2BQ9UNT1 228 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 CEP83Q9Y592 693 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 DCAF1Q9Y4B6 1507 aa5.06□□□□□ -1.6
BRCA1-220ENST00000492859 CTAGE5O15320 804 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 GPR37L1O60883 481 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 HNRNPCP07910 306 aaKnown RBP eCLIP5.05□□□□□ -1.6
BRCA1-220ENST00000492859 PSMA3P25788 255 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 OAS2P29728 719 aaKnown RBP5.05□□□□□ -1.6
BRCA1-220ENST00000492859 CDKN1CP49918 316 aaPredicted RBP5.05□□□□□ -1.6
BRCA1-220ENST00000492859 EXOSC10Q01780 885 aaKnown RBP5.05□□□□□ -1.6
BRCA1-220ENST00000492859 DDB1Q16531 1140 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 WASHC4Q2M389 1173 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 FAM83BQ5T0W9 1011 aa5.05□□□□□ -1.6
BRCA1-220ENST00000492859 ANKRD45Q5TZF3 282 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms