RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 CFAP58Q5T655 872 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 TMC6Q7Z403 805 aa8.26□□□□□ -1.09
SYNE1-228ENST00000490135 IBTKQ9P2D0 1353 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 A0A1W2PRG0 241 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 CEP104O60308 925 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 HNRNPMP52272 730 aaKnown RBP eCLIP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 USP48Q86UV5 1035 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 MPHOSPH6Q99547 160 aaKnown RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 STRN4Q9NRL3 753 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 RIPOR2Q9Y4F9 1068 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 GPRASP1Q5JY77 1395 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 ANKRD36BQ8N2N9 1353 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 RRBP1Q9P2E9 1410 aaKnown RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 ATP8B1O43520 1251 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 RMI1Q9H9A7 625 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 LMBRD1Q9NUN5 540 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 LRP2BPQ9P2M1 347 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 PUF60Q9UHX1 559 aaKnown RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 NCAPD3P42695 1498 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 TTC21AQ8NDW8 1320 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC144AA2RUR9 1427 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 RWDD2BP57060 319 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 FKBP4Q02790 459 aaKnown RBP eCLIP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 PPP2R3AQ06190 1150 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC96Q2M329 555 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 MUM1L1Q5H9M0 696 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 FBXO38Q6PIJ6 1188 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 ST7Q9NRC1 585 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 HSF2BPO75031 334 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 SEC31AO94979 1220 aaKnown RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 TATP17735 454 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 SNX16P57768 344 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 UBE2HP62256 183 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 KLHL23Q8NBE8 558 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 FAM200AQ8TCP9 573 aa8.25□□□□□ -1.09
SYNE1-228ENST00000490135 PHAXQ9H814 394 aaKnown RBP8.25□□□□□ -1.09
SYNE1-228ENST00000490135 GNAI2P04899 355 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ABCD1P33897 745 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ERCC6LQ2NKX8 1250 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 STXBP4Q6ZWJ1 553 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 LUC7L3O95232 432 aaKnown RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 MAP4K4O95819 1239 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 POLR3DP05423 398 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 CABP4P57796 275 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 GNG11P61952 73 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 SH2D4BQ5SQS7 431 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ZNF365Q70YC5 407 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 MAATS1Q7Z4T9 603 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 CHD1LQ86WJ1 897 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 CKAP2LQ8IYA6 745 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC12Q8WUD4 166 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 SMC6Q96SB8 1091 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 UTP14AQ9BVJ6 771 aaKnown RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 OPA1O60313 960 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 IGHMBP2P38935 993 aaKnown RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 PRPF4BQ13523 1007 aaKnown RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ANO6Q4KMQ2 910 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 MIA2Q96PC5 1412 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 MAP3K1Q13233 1512 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 GMNNO75496 209 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 YEATS4O95619 227 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC14Q49A88 953 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 NUTM2GQ5VZR2 741 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 BLOC1S2Q6QNY1 142 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 SMC1BQ8NDV3 1235 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ATRIPQ8WXE1 791 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ZSCAN31Q96LW9 406 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 TSC22D3Q99576 134 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 NSRP1Q9H0G5 558 aaKnown RBP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 RABEP2Q9H5N1 569 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 ADAMTS8Q9UP79 889 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.24□□□□□ -1.09
SYNE1-228ENST00000490135 PDS5BQ9NTI5 1447 aa8.24□□□□□ -1.09
SYNE1-228ENST00000490135 PRC1O43663 620 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC155Q8N6L0 562 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 SYNCQ9H7C4 482 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 SEPT10Q9P0V9 454 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 PPP6R1Q9UPN7 881 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 KRT32Q14532 448 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 SIL1Q9H173 461 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 BAZ1AQ9NRL2 1556 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-228ENST00000490135 TULP2O00295 520 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 KIF5AQ12840 1032 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 KMT5BQ4FZB7 885 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 AIDAQ96BJ3 306 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 SPDL1Q96EA4 605 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 VCXQ9H320 206 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 SNUPNO95149 360 aaKnown RBP8.23□□□□□ -1.09
SYNE1-228ENST00000490135 PCK1P35558 622 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 CLCN6P51797 869 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 KIAA1524Q8TCG1 905 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 NUP88Q99567 741 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-228ENST00000490135 YIPF3Q9GZM5 350 aa8.23□□□□□ -1.09
SYNE1-228ENST00000490135 ST20-MTHFSA0A0A6YYL1 179 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 NDUFAB1O14561 156 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CAVIN2O95810 425 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 KCNA4P22459 653 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 NLRP6P59044 892 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms