RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ARAFP10398 606 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 VAMP1P23763 118 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 FMR1Q06787 632 aaKnown RBP eCLIP6.38□□□□□ -1.39
PTCD3-216ENST00000487043 DGKZQ13574 1117 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 C11orf91Q3C1V1 193 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 ARSJQ5FYB0 599 aaPredicted RBP6.38□□□□□ -1.39
PTCD3-216ENST00000487043 DMRTB1Q96MA1 342 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 NOP53Q9NZM5 478 aaKnown RBP6.38□□□□□ -1.39
PTCD3-216ENST00000487043 KLK14Q9P0G3 267 aa6.38□□□□□ -1.39
PTCD3-216ENST00000487043 ZCCHC6Q5VYS8 1495 aaKnown RBP6.38□□□□□ -1.39
PTCD3-216ENST00000487043 LOC105371045A0A1W2PR82 267 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 C1QTNF9BB2RNN3 333 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 ATXN7O15265 892 aaPredicted RBP6.37□□□□□ -1.39
PTCD3-216ENST00000487043 RECKO95980 971 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 LDHBP07195 334 aaKnown RBP6.37□□□□□ -1.39
PTCD3-216ENST00000487043 HIRAP54198 1017 aaPredicted RBP6.37□□□□□ -1.39
PTCD3-216ENST00000487043 DNM1Q05193 864 aaKnown RBP6.37□□□□□ -1.39
PTCD3-216ENST00000487043 EHHADHQ08426 723 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 PDE3BQ13370 1112 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 RTN1Q16799 776 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 POTEAQ6S8J7 498 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 NIFKQ9BYG3 293 aaKnown RBP6.37□□□□□ -1.39
PTCD3-216ENST00000487043 PHACTR1Q9C0D0 580 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 POLIQ9UNA4 740 aa6.37□□□□□ -1.39
PTCD3-216ENST00000487043 DCDC2BA2VCK2 349 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 GPR182O15218 404 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 HOXB4P17483 251 aaPredicted RBP6.36□□□□□ -1.39
PTCD3-216ENST00000487043 XPCQ01831 940 aaPredicted RBP6.36□□□□□ -1.39
PTCD3-216ENST00000487043 DSC3Q14574 896 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 NLRP8Q86W28 1048 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 ETFBKMTQ8IXQ9 262 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 EDEM1Q92611 657 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 IFT43Q96FT9 208 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 FAM129BQ96TA1 746 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 NIF3L1Q9GZT8 377 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 GJA3Q9Y6H8 435 aa6.36□□□□□ -1.39
PTCD3-216ENST00000487043 ABCC9O60706 1549 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 KHNYNO15037 678 aaKnown RBP6.35□□□□□ -1.39
PTCD3-216ENST00000487043 CD33P20138 364 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 ATP4AP20648 1035 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 ADH6P28332 368 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 ZAP70P43403 619 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 DGKGP49619 791 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 NBPF1Q3BBV0 1214 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 CHSY3Q70JA7 882 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 CD163Q86VB7 1156 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 Q8N3U1 123 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 FAM161BQ96MY7 647 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 BACH2Q9BYV9 841 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 WWC3Q9ULE0 1092 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 PRR12Q9ULL5 1215 aa6.35□□□□□ -1.39
PTCD3-216ENST00000487043 A0A1W2PNR3 127 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 PRPF40AO75400 957 aaKnown RBP6.34□□□□□ -1.39
PTCD3-216ENST00000487043 IGHA2P01877 340 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 MAPTP10636 758 aaKnown RBP6.34□□□□□ -1.39
PTCD3-216ENST00000487043 TATP17735 454 aaPredicted RBP6.34□□□□□ -1.39
PTCD3-216ENST00000487043 MZF1P28698 734 aaPredicted RBP6.34□□□□□ -1.39
PTCD3-216ENST00000487043 TXLNAP40222 546 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 ATP2B2Q01814 1243 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 SETDB2Q96T68 719 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 DUSP9Q99956 384 aaKnown RBP6.34□□□□□ -1.39
PTCD3-216ENST00000487043 MRS2Q9HD23 443 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 RNF19AQ9NV58 838 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 PARP2Q9UGN5 583 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 HCN2Q9UL51 889 aa6.34□□□□□ -1.39
PTCD3-216ENST00000487043 PDGFAP04085 211 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 CHRNA4P43681 627 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 USP5P45974 858 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 MRPL58Q14197 206 aaKnown RBP6.33□□□□□ -1.4
PTCD3-216ENST00000487043 TREML1Q86YW5 311 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 GJD3Q8N144 294 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 GPR152Q8TDT2 470 aa6.33□□□□□ -1.4
PTCD3-216ENST00000487043 ALKBH8Q96BT7 664 aaKnown RBP6.33□□□□□ -1.4
PTCD3-216ENST00000487043 DCAF1Q9Y4B6 1507 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 PNMA6FA0A0J9YX94 578 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 PCSK2P16519 638 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 PCBP4P57723 403 aaKnown RBP6.32□□□□□ -1.4
PTCD3-216ENST00000487043 FGD1P98174 961 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 TNP2Q05952 138 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 C8orf34Q49A92 452 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 FAM182BQ5T319 152 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 C1orf53Q5VUE5 145 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 RHPN1Q8TCX5 695 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 SHROOM4Q9ULL8 1493 aa6.32□□□□□ -1.4
PTCD3-216ENST00000487043 PSMD2Q13200 908 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 DOC2BQ14184 412 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 ENOX2Q16206 610 aaKnown RBP6.31□□□□□ -1.4
PTCD3-216ENST00000487043 C9orf131Q5VYM1 1079 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 BICDL1Q6ZP65 573 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 FCHSD1Q86WN1 690 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 TMEM87AQ8NBN3 555 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 TTC16Q8NEE8 873 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 NUDT16Q96DE0 195 aaKnown RBP6.31□□□□□ -1.4
PTCD3-216ENST00000487043 AVENQ9NQS1 362 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-216ENST00000487043 KLF15Q9UIH9 416 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 BCS1LQ9Y276 419 aa6.31□□□□□ -1.4
PTCD3-216ENST00000487043 A6NHS1 94 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 SORBS3O60504 671 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 DAB2P98082 770 aa6.3□□□□□ -1.4
PTCD3-216ENST00000487043 PLVAPQ9BX97 442 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms