RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 WDR90Q96KV7 1748 aa6.76□□□□□ -1.33
CCDC39-205ENST00000485055 C7P10643 843 aa6.76□□□□□ -1.33
CCDC39-205ENST00000485055 TCEAL1Q15170 157 aa6.76□□□□□ -1.33
CCDC39-205ENST00000485055 INTS5Q6P9B9 1019 aaKnown RBP6.76□□□□□ -1.33
CCDC39-205ENST00000485055 KCNB2Q92953 911 aa6.76□□□□□ -1.33
CCDC39-205ENST00000485055 TANGO6Q9C0B7 1094 aa6.76□□□□□ -1.33
CCDC39-205ENST00000485055 PDGFDQ9GZP0 370 aaPredicted RBP6.76□□□□□ -1.33
CCDC39-205ENST00000485055 IQSEC3Q9UPP2 1182 aaPredicted RBP6.76□□□□□ -1.33
CCDC39-205ENST00000485055 PDE6BP35913 854 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 PHLDB3Q6NSJ2 640 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 ZNF530Q6P9A1 599 aaPredicted RBP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 TFCP2L1Q9NZI6 479 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 COL11A2P13942 1736 aaPredicted RBP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 NUP98P52948 1817 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 USP42Q9H9J4 1324 aaKnown RBP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 CYP19A1P11511 503 aaPredicted RBP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 PPP2R1AP30153 589 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 C1orf141Q5JVX7 400 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 SDE2Q6IQ49 451 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 MAMSTRQ6ZN01 415 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 PNNQ9H307 717 aaKnown RBP6.75□□□□□ -1.33
CCDC39-205ENST00000485055 ASAP1Q9ULH1 1129 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 CACNA1FO60840 1977 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 LRRC37AA6NMS7 1700 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 A0A087WZG4 1122 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 ANKRD33BA6NCL7 494 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 NEFMP07197 916 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 SULT6B1Q6IMI4 303 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 CLEC4GQ6UXB4 293 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 PLEKHF1Q96S99 279 aa6.75□□□□□ -1.33
CCDC39-205ENST00000485055 ERBB4Q15303 1308 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 LMOD1P29536 600 aaPredicted RBP6.74□□□□□ -1.33
CCDC39-205ENST00000485055 CABP4P57796 275 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 MTHFSDQ2M296 383 aaKnown RBP6.74□□□□□ -1.33
CCDC39-205ENST00000485055 NOP9Q86U38 636 aaKnown RBP6.74□□□□□ -1.33
CCDC39-205ENST00000485055 MAF1Q9H063 256 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 PRR12Q9ULL5 1215 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 GNAT3A8MTJ3 354 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 ERCC3P19447 782 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 CCDC181Q5TID7 509 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 C11orf96Q7Z7L8 435 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 CFAP53Q96M91 514 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 PPP1R12CQ9BZL4 782 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 TIAM2Q8IVF5 1701 aa6.74□□□□□ -1.33
CCDC39-205ENST00000485055 KLRG2A4D1S0 409 aaPredicted RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 ZBTB7AO95365 584 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 GYS1P13807 737 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 MPRIPQ6WCQ1 1025 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 PNISRQ8TF01 805 aaKnown RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 NARFQ9UHQ1 456 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 RTCBQ9Y3I0 505 aaKnown RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 SCNN1AP37088 669 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 ATP6V1AP38606 617 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 RFC5P40937 340 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 EIF5P55010 431 aaKnown RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 FAM193AP78312 1265 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 TRAPPC3LQ5T215 181 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 CCDC146Q8IYE0 955 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 CCDC87Q9NVE4 849 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 MAGEC2Q9UBF1 373 aaPredicted RBP6.73□□□□□ -1.33
CCDC39-205ENST00000485055 NUDCQ9Y266 331 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 ATP10DQ9P241 1426 aa6.73□□□□□ -1.33
CCDC39-205ENST00000485055 DEKP35659 375 aaKnown RBP6.72□□□□□ -1.33
CCDC39-205ENST00000485055 IL6STP40189 918 aaPredicted RBP6.72□□□□□ -1.33
CCDC39-205ENST00000485055 TSHZ1Q6ZSZ6 1077 aa6.72□□□□□ -1.33
CCDC39-205ENST00000485055 AMIGO3Q86WK7 504 aa6.72□□□□□ -1.33
CCDC39-205ENST00000485055 LTBP3Q9NS15 1303 aa6.72□□□□□ -1.33
CCDC39-205ENST00000485055 IL17REQ8NFR9 667 aa6.72□□□□□ -1.33
CCDC39-205ENST00000485055 TMX4Q9H1E5 349 aaPredicted RBP6.72□□□□□ -1.33
CCDC39-205ENST00000485055 ADAMTSL1Q8N6G6 1762 aa6.72□□□□□ -1.33
CCDC39-205ENST00000485055 PALM3A6NDB9 673 aaPredicted RBP6.71□□□□□ -1.33
CCDC39-205ENST00000485055 GTF2F1P35269 517 aaKnown RBP eCLIP6.71□□□□□ -1.33
CCDC39-205ENST00000485055 CRKLP46109 303 aaKnown RBP6.71□□□□□ -1.33
CCDC39-205ENST00000485055 SERPINB4P48594 390 aa6.71□□□□□ -1.33
CCDC39-205ENST00000485055 RINLQ6ZS11 566 aa6.71□□□□□ -1.33
CCDC39-205ENST00000485055 DMGDHQ9UI17 866 aaKnown RBP6.71□□□□□ -1.33
CCDC39-205ENST00000485055 COL15A1P39059 1388 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 SCN4AP35499 1836 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 WDHD1O75717 1129 aaPredicted RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 KCNA3P22001 575 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 MARSP56192 900 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 NFATC2IPQ8NCF5 419 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 SNED1Q8TER0 1413 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 DDX27Q96GQ7 796 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 BACH2Q9BYV9 841 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 CHMP4BQ9H444 224 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 RNF123Q5XPI4 1314 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 DDX60Q8IY21 1712 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 POLRMTO00411 1230 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 CAMK2BQ13554 666 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 MYBPC2Q14324 1141 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 PIK3R5Q8WYR1 880 aa6.71□□□□□ -1.34
CCDC39-205ENST00000485055 GNL3LQ9NVN8 582 aaKnown RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 FARP1Q9Y4F1 1045 aaPredicted RBP6.71□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF790Q6PG37 636 aa6.7□□□□□ -1.34
CCDC39-205ENST00000485055 HELBQ8NG08 1087 aaPredicted RBP6.7□□□□□ -1.34
CCDC39-205ENST00000485055 LGR6Q9HBX8 967 aa6.7□□□□□ -1.34
CCDC39-205ENST00000485055 CCDC189A1A4V9 331 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms