RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 TRIM35Q9UPQ4 493 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 ATP6V0A2Q9Y487 856 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 RIC1Q4ADV7 1423 aa12.99□□□□□ -0.33
CPSF4-213ENST00000484112 ABCC4O15439 1325 aa12.99□□□□□ -0.33
CPSF4-213ENST00000484112 CCER2I3L3R5 266 aa12.99□□□□□ -0.33
CPSF4-213ENST00000484112 APAF1O14727 1248 aa12.99□□□□□ -0.33
CPSF4-213ENST00000484112 GMPSP49915 693 aaPredicted RBP12.99□□□□□ -0.33
CPSF4-213ENST00000484112 DPP8Q6V1X1 898 aaPredicted RBP12.99□□□□□ -0.33
CPSF4-213ENST00000484112 CFAP44Q96MT7 982 aa12.99□□□□□ -0.33
CPSF4-213ENST00000484112 GLIS2Q9BZE0 524 aaPredicted RBP12.99□□□□□ -0.33
CPSF4-213ENST00000484112 RAD17O75943 681 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 HCLS1P14317 486 aaPredicted RBP12.98□□□□□ -0.33
CPSF4-213ENST00000484112 AIMP1Q12904 312 aaKnown RBP12.98□□□□□ -0.33
CPSF4-213ENST00000484112 NEUROD2Q15784 382 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 SLC10A5Q5PT55 438 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 CIAPIN1Q6FI81 312 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 MPNDQ8N594 471 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 NECTIN2Q92692 538 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 ZNF428Q96B54 188 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 VPS33BQ9H267 617 aa12.98□□□□□ -0.33
CPSF4-213ENST00000484112 ERBB4Q15303 1308 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 CHL1O00533 1208 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 BBOX1O75936 387 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 MAP2K2P36507 400 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 PDIA6Q15084 440 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 PROSER3Q2NL68 480 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 SAPCD2Q86UD0 394 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 SP8Q8IXZ3 490 aa12.97□□□□□ -0.33
CPSF4-213ENST00000484112 TNIP1Q15025 636 aa12.96□□□□□ -0.33
CPSF4-213ENST00000484112 DDX46Q7L014 1031 aaKnown RBP12.96□□□□□ -0.33
CPSF4-213ENST00000484112 COPS6Q7L5N1 327 aa12.96□□□□□ -0.33
CPSF4-213ENST00000484112 RTFDC1Q9BY42 306 aaPredicted RBP12.96□□□□□ -0.33
CPSF4-213ENST00000484112 IFT57Q9NWB7 429 aa12.96□□□□□ -0.33
CPSF4-213ENST00000484112 HOXB7P09629 217 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 HIRAP54198 1017 aaPredicted RBP12.95□□□□□ -0.34
CPSF4-213ENST00000484112 GNAI1P63096 354 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 MLLT1Q03111 559 aaPredicted RBP12.95□□□□□ -0.34
CPSF4-213ENST00000484112 KIAA2012Q0VF49 1180 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 LRP10Q7Z4F1 713 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 TRPM4Q8TD43 1214 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 XAGE3Q8WTP9 111 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 CHMP4AQ9BY43 222 aa12.95□□□□□ -0.34
CPSF4-213ENST00000484112 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
CPSF4-213ENST00000484112 CNOT7Q9UIV1 285 aaKnown RBP12.95□□□□□ -0.34
CPSF4-213ENST00000484112 IL16Q14005 1332 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 SHTN1A0MZ66 631 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 H7C1D1 291 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 ZNF853P0CG23 659 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 GRAPQ13588 217 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 HSP90AB3PQ58FF7 597 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 CDC37L1Q7L3B6 337 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 USP48Q86UV5 1035 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 NLRP10Q86W26 655 aa12.94□□□□□ -0.34
CPSF4-213ENST00000484112 GRAPLQ8TC17 118 aaPredicted RBP12.94□□□□□ -0.34
CPSF4-213ENST00000484112 TRPM7Q96QT4 1865 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 SH3TC1Q8TE82 1336 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 DIEXFQ68CQ4 756 aaKnown RBP12.93□□□□□ -0.34
CPSF4-213ENST00000484112 DLK2Q6UY11 383 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 MICALL2Q8IY33 904 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 ZC3H15Q8WU90 426 aaKnown RBP12.93□□□□□ -0.34
CPSF4-213ENST00000484112 MCOLN1Q9GZU1 580 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 PGAP2Q9UHJ9 254 aa12.93□□□□□ -0.34
CPSF4-213ENST00000484112 ZBTB12Q9Y330 459 aaPredicted RBP12.93□□□□□ -0.34
CPSF4-213ENST00000484112 YDJCA8MPS7 323 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 RIMBP2O15034 1052 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 CA12O43570 354 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 TCIRG1Q13488 830 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 RBM26Q5T8P6 1007 aaKnown RBP12.92□□□□□ -0.34
CPSF4-213ENST00000484112 WDR63Q8IWG1 891 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 WWC1Q8IX03 1113 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 FAM9BQ8IZU0 186 aa12.92□□□□□ -0.34
CPSF4-213ENST00000484112 NSFL1CQ9UNZ2 370 aaKnown RBP12.92□□□□□ -0.34
CPSF4-213ENST00000484112 LAS1LQ9Y4W2 734 aaKnown RBP12.92□□□□□ -0.34
CPSF4-213ENST00000484112 THSD7BQ9C0I4 1608 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 CDHR2Q9BYE9 1310 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 BRPF1P55201 1214 aaPredicted RBP12.91□□□□□ -0.34
CPSF4-213ENST00000484112 HUNKP57058 714 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 DGKZQ13574 1117 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 WASHC4Q2M389 1173 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 SAMD7Q7Z3H4 446 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 HHIPL1Q96JK4 782 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 ZIC5Q96T25 663 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 DBNDD1Q9H9R9 158 aa12.91□□□□□ -0.34
CPSF4-213ENST00000484112 C6orf229H3BNL8 230 aa12.9□□□□□ -0.34
CPSF4-213ENST00000484112 PSMD14O00487 310 aa12.9□□□□□ -0.34
CPSF4-213ENST00000484112 KRT24Q2M2I5 525 aa12.9□□□□□ -0.34
CPSF4-213ENST00000484112 TBC1D10BQ4KMP7 808 aaPredicted RBP12.9□□□□□ -0.34
CPSF4-213ENST00000484112 RTL5Q5HYW3 569 aaPredicted RBP12.9□□□□□ -0.34
CPSF4-213ENST00000484112 MBIPQ9NS73 344 aa12.9□□□□□ -0.34
CPSF4-213ENST00000484112 SLC34A2O95436 690 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 RGS19P49795 217 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 NOGQ13253 232 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 DOK7Q18PE1 504 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 KRT26Q7Z3Y9 468 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 TMC4Q7Z404 712 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 CELF1Q92879 486 aaKnown RBP12.89□□□□□ -0.35
CPSF4-213ENST00000484112 FAM89AQ96GI7 184 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 CHPF2Q9P2E5 772 aa12.89□□□□□ -0.35
CPSF4-213ENST00000484112 ATP5J2-PTCD1G3V325 749 aa12.88□□□□□ -0.35
CPSF4-213ENST00000484112 GPSM2P81274 684 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms