RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 DUOX1Q9NRD9 1551 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 PARP10Q53GL7 1025 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 DPP8Q6V1X1 898 aaPredicted RBP24.43■■□□□ 1.5
SHH-205ENST00000472308 CDC37L1Q7L3B6 337 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 LRP10Q7Z4F1 713 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 PPP1R42Q7Z4L9 355 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 PNISRQ8TF01 805 aaKnown RBP24.43■■□□□ 1.5
SHH-205ENST00000472308 DLG5Q8TDM6 1919 aa24.43■■□□□ 1.5
SHH-205ENST00000472308 YDJCA8MPS7 323 aa24.42■■□□□ 1.5
SHH-205ENST00000472308 BCL2L13Q9BXK5 485 aa24.42■■□□□ 1.5
SHH-205ENST00000472308 TMX4Q9H1E5 349 aaPredicted RBP24.42■■□□□ 1.5
SHH-205ENST00000472308 LAMB2P55268 1798 aa24.42■■□□□ 1.5
SHH-205ENST00000472308 CCER1Q8TC90 406 aaPredicted RBP24.41■■□□□ 1.5
SHH-205ENST00000472308 THUMPD2Q9BTF0 503 aaKnown RBP24.41■■□□□ 1.5
SHH-205ENST00000472308 FAM155AB1AL88 458 aaPredicted RBP24.4■■□□□ 1.5
SHH-205ENST00000472308 HUNKP57058 714 aa24.4■■□□□ 1.5
SHH-205ENST00000472308 TNIP1Q15025 636 aa24.4■■□□□ 1.5
SHH-205ENST00000472308 USP48Q86UV5 1035 aa24.4■■□□□ 1.5
SHH-205ENST00000472308 SP8Q8IXZ3 490 aa24.4■■□□□ 1.5
SHH-205ENST00000472308 UTP14AQ9BVJ6 771 aaKnown RBP24.4■■□□□ 1.5
SHH-205ENST00000472308 CNOT7Q9UIV1 285 aaKnown RBP24.4■■□□□ 1.5
SHH-205ENST00000472308 ERBB4Q15303 1308 aa24.39■■□□□ 1.5
SHH-205ENST00000472308 BBOX1O75936 387 aa24.39■■□□□ 1.49
SHH-205ENST00000472308 MPNDQ8N594 471 aa24.39■■□□□ 1.49
SHH-205ENST00000472308 PDIA6Q15084 440 aa24.38■■□□□ 1.49
SHH-205ENST00000472308 MICALL2Q8IY33 904 aa24.38■■□□□ 1.49
SHH-205ENST00000472308 ANKRD36CQ5JPF3 1778 aa24.38■■□□□ 1.49
SHH-205ENST00000472308 LRRC37AA6NMS7 1700 aa24.36■■□□□ 1.49
SHH-205ENST00000472308 EGFRP00533 1210 aa24.36■■□□□ 1.49
SHH-205ENST00000472308 HCLS1P14317 486 aaPredicted RBP24.36■■□□□ 1.49
SHH-205ENST00000472308 PROSER3Q2NL68 480 aa24.36■■□□□ 1.49
SHH-205ENST00000472308 ZBTB12Q9Y330 459 aaPredicted RBP24.36■■□□□ 1.49
SHH-205ENST00000472308 SOX10P56693 466 aa24.35■■□□□ 1.49
SHH-205ENST00000472308 SAMD7Q7Z3H4 446 aa24.35■■□□□ 1.49
SHH-205ENST00000472308 SAGE1Q9NXZ1 904 aa24.35■■□□□ 1.49
SHH-205ENST00000472308 H7C1D1 291 aa24.34■■□□□ 1.49
SHH-205ENST00000472308 RGMBQ6NW40 437 aa24.34■■□□□ 1.49
SHH-205ENST00000472308 PLEKHF1Q96S99 279 aa24.34■■□□□ 1.49
SHH-205ENST00000472308 TAF1P21675 1872 aa24.33■■□□□ 1.49
SHH-205ENST00000472308 ANXA1P04083 346 aa24.33■■□□□ 1.49
SHH-205ENST00000472308 GRAPQ13588 217 aa24.33■■□□□ 1.49
SHH-205ENST00000472308 NLRP10Q86W26 655 aa24.33■■□□□ 1.49
SHH-205ENST00000472308 GRAPLQ8TC17 118 aaPredicted RBP24.33■■□□□ 1.49
SHH-205ENST00000472308 ADM5C9JUS6 153 aa24.32■■□□□ 1.48
SHH-205ENST00000472308 KIF23Q02241 960 aaPredicted RBP24.32■■□□□ 1.48
SHH-205ENST00000472308 NFE2L2Q16236 605 aa24.32■■□□□ 1.48
SHH-205ENST00000472308 KRT26Q7Z3Y9 468 aa24.32■■□□□ 1.48
SHH-205ENST00000472308 DPF2Q92785 391 aa24.32■■□□□ 1.48
SHH-205ENST00000472308 GBA2Q9HCG7 927 aaPredicted RBP24.32■■□□□ 1.48
SHH-205ENST00000472308 PSMD14O00487 310 aa24.31■■□□□ 1.48
SHH-205ENST00000472308 TBC1D10BQ4KMP7 808 aaPredicted RBP24.31■■□□□ 1.48
SHH-205ENST00000472308 DDX46Q7L014 1031 aaKnown RBP24.31■■□□□ 1.48
SHH-205ENST00000472308 RNF186Q9NXI6 227 aa24.31■■□□□ 1.48
SHH-205ENST00000472308 COL4A1P02462 1669 aa24.29■■□□□ 1.48
SHH-205ENST00000472308 TRPA1O75762 1119 aa24.28■■□□□ 1.48
SHH-205ENST00000472308 EIF2S2P20042 333 aaKnown RBP24.28■■□□□ 1.48
SHH-205ENST00000472308 CCDC102AQ96A19 550 aa24.28■■□□□ 1.48
SHH-205ENST00000472308 DBNDD1Q9H9R9 158 aa24.28■■□□□ 1.48
SHH-205ENST00000472308 RTL9Q8NET4 1388 aa24.28■■□□□ 1.48
SHH-205ENST00000472308 ZNF157P51786 506 aaPredicted RBP24.27■■□□□ 1.48
SHH-205ENST00000472308 C2orf69Q8N8R5 385 aa24.27■■□□□ 1.48
SHH-205ENST00000472308 KCNQ5Q9NR82 932 aa24.27■■□□□ 1.48
SHH-205ENST00000472308 TRMT112Q9UI30 125 aaKnown RBP24.27■■□□□ 1.48
SHH-205ENST00000472308 TSPYL4Q9UJ04 414 aa24.27■■□□□ 1.48
SHH-205ENST00000472308 SH3TC1Q8TE82 1336 aa24.27■■□□□ 1.48
SHH-205ENST00000472308 NEFMP07197 916 aa24.26■■□□□ 1.47
SHH-205ENST00000472308 SLC10A3P09131 477 aa24.26■■□□□ 1.47
SHH-205ENST00000472308 WASHC4Q2M389 1173 aa24.26■■□□□ 1.47
SHH-205ENST00000472308 COPS6Q7L5N1 327 aa24.26■■□□□ 1.47
SHH-205ENST00000472308 TMC4Q7Z404 712 aa24.26■■□□□ 1.47
SHH-205ENST00000472308 DDX60Q8IY21 1712 aaKnown RBP24.26■■□□□ 1.47
SHH-205ENST00000472308 HSP90AB3PQ58FF7 597 aa24.25■■□□□ 1.47
SHH-205ENST00000472308 XAGE3Q8WTP9 111 aa24.25■■□□□ 1.47
SHH-205ENST00000472308 ZNF428Q96B54 188 aa24.25■■□□□ 1.47
SHH-205ENST00000472308 CSRNP1Q96S65 589 aa24.25■■□□□ 1.47
SHH-205ENST00000472308 POLR2AP24928 1970 aaKnown RBP24.25■■□□□ 1.47
SHH-205ENST00000472308 RPS12P25398 132 aaKnown RBP24.24■■□□□ 1.47
SHH-205ENST00000472308 TCIRG1Q13488 830 aa24.24■■□□□ 1.47
SHH-205ENST00000472308 PRPF38BQ5VTL8 546 aaKnown RBP24.24■■□□□ 1.47
SHH-205ENST00000472308 DCPSQ96C86 337 aaKnown RBP24.24■■□□□ 1.47
SHH-205ENST00000472308 POLLQ9UGP5 575 aa24.24■■□□□ 1.47
SHH-205ENST00000472308 ASTN2O75129 1339 aaPredicted RBP24.24■■□□□ 1.47
SHH-205ENST00000472308 RIMBP2O15034 1052 aa24.23■■□□□ 1.47
SHH-205ENST00000472308 AIMP1Q12904 312 aaKnown RBP24.23■■□□□ 1.47
SHH-205ENST00000472308 RBM26Q5T8P6 1007 aaKnown RBP24.23■■□□□ 1.47
SHH-205ENST00000472308 CTU1Q7Z7A3 348 aaKnown RBP24.23■■□□□ 1.47
SHH-205ENST00000472308 CELF1Q92879 486 aaKnown RBP24.23■■□□□ 1.47
SHH-205ENST00000472308 NSFL1CQ9UNZ2 370 aaKnown RBP24.23■■□□□ 1.47
SHH-205ENST00000472308 ECE2O60344 883 aa24.22■■□□□ 1.47
SHH-205ENST00000472308 GGA3Q9NZ52 723 aa24.22■■□□□ 1.47
SHH-205ENST00000472308 AKAP11Q9UKA4 1901 aa24.22■■□□□ 1.47
SHH-205ENST00000472308 GPSM2P81274 684 aa24.21■■□□□ 1.47
SHH-205ENST00000472308 DOK7Q18PE1 504 aa24.21■■□□□ 1.47
SHH-205ENST00000472308 KIF4BQ2VIQ3 1234 aa24.21■■□□□ 1.47
SHH-205ENST00000472308 NECTIN2Q92692 538 aa24.21■■□□□ 1.47
SHH-205ENST00000472308 SCN9AQ15858 1988 aa24.2■■□□□ 1.46
SHH-205ENST00000472308 RASAL3Q86YV0 1011 aa24.2■■□□□ 1.46
SHH-205ENST00000472308 CDCA5Q96FF9 252 aa24.2■■□□□ 1.46
SHH-205ENST00000472308 C6orf229H3BNL8 230 aa24.19■■□□□ 1.46
SHH-205ENST00000472308 HPS5Q9UPZ3 1129 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms