RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 PIP4K2AP48426 406 aaPredicted RBP12.25□□□□□ -0.45
PTPRE-205ENST00000463727 GUCY1B3Q02153 619 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 CEP57L1Q8IYX8 460 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 ANKRD26Q9UPS8 1709 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 TRIM29Q14134 588 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 MCMDC2Q4G0Z9 681 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 LUZP1Q86V48 1076 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 C17orf53Q8N3J3 647 aaPredicted RBP12.25□□□□□ -0.45
PTPRE-205ENST00000463727 PDCL2Q8N4E4 241 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 TPCN1Q9ULQ1 816 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 IFIT1P09914 478 aaKnown RBP12.25□□□□□ -0.45
PTPRE-205ENST00000463727 PROSER3Q2NL68 480 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 CDC37L1Q7L3B6 337 aa12.25□□□□□ -0.45
PTPRE-205ENST00000463727 CTAGE5O15320 804 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 CAVIN2O95810 425 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 TTC39AQ5SRH9 613 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 ZNF790Q6PG37 636 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 C16orf45Q96MC5 204 aaPredicted RBP12.24□□□□□ -0.45
PTPRE-205ENST00000463727 CTNNA3Q9UI47 895 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 PPFIA3O75145 1194 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 LARGE1O95461 756 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC57Q2TAC2 916 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 UBR1Q8IWV7 1749 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 A0A0D9SFI3 127 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 SMC2O95347 1197 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 TFCP2Q12800 502 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 LMBR1LQ6UX01 489 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 MAP4K1Q92918 833 aa12.24□□□□□ -0.45
PTPRE-205ENST00000463727 SALL3Q9BXA9 1300 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 HOMER1Q86YM7 354 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 TMEM87AQ8NBN3 555 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 TTC14Q96N46 770 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 DNAJC25Q9H1X3 360 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 IL25Q9H293 177 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 ANO10Q9NW15 660 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 NFXL1Q6ZNB6 911 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 PTGS1P23219 599 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 TTC6Q86TZ1 520 aa12.23□□□□□ -0.45
PTPRE-205ENST00000463727 CCAR1Q8IX12 1150 aaKnown RBP12.23□□□□□ -0.45
PTPRE-205ENST00000463727 EDC3Q96F86 508 aaKnown RBP12.23□□□□□ -0.45
PTPRE-205ENST00000463727 TNNT1P13805 278 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 GCKRQ14397 625 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 MYRIPQ8NFW9 859 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 AK9Q5TCS8 1911 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 FSIP1Q8NA03 581 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC34Q96HJ3 373 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 ORAI2Q96SN7 254 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 ADAMTS13Q76LX8 1427 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 EVA1CP58658 441 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 NECTIN1Q15223 517 aa12.22□□□□□ -0.45
PTPRE-205ENST00000463727 IMMTQ16891 758 aaKnown RBP12.22□□□□□ -0.45
PTPRE-205ENST00000463727 LEO1Q8WVC0 666 aaPredicted RBP12.22□□□□□ -0.45
PTPRE-205ENST00000463727 METTL22Q9BUU2 404 aaPredicted RBP12.22□□□□□ -0.45
PTPRE-205ENST00000463727 LIG1P18858 919 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC85AQ96PX6 553 aaPredicted RBP12.21□□□□□ -0.45
PTPRE-205ENST00000463727 MTX1Q13505 466 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 STX1AQ16623 288 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 TNNI3KQ59H18 835 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC129Q6ZRS4 1044 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 FPGT-TNNI3KV9GXZ4 949 aa12.21□□□□□ -0.45
PTPRE-205ENST00000463727 PRAMEF22A3QJZ6 481 aa12.21□□□□□ -0.46
PTPRE-205ENST00000463727 DBNDD2Q9BQY9 259 aa12.21□□□□□ -0.46
PTPRE-205ENST00000463727 NDUFB9Q9Y6M9 179 aa12.21□□□□□ -0.46
PTPRE-205ENST00000463727 CBX1P83916 185 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 C8orf76Q96K31 380 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 NEURL1BA8MQ27 555 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 JAK2O60674 1132 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 SASH1O94885 1247 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 TOM1L2Q6ZVM7 507 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 DHX32Q7L7V1 743 aaKnown RBP12.2□□□□□ -0.46
PTPRE-205ENST00000463727 ZBTB3Q9H5J0 574 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 CWC25Q9NXE8 425 aaPredicted RBP12.2□□□□□ -0.46
PTPRE-205ENST00000463727 TLR7Q9NYK1 1049 aaKnown RBP12.2□□□□□ -0.46
PTPRE-205ENST00000463727 PTPN14Q15678 1187 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 CBX8Q9HC52 389 aa12.2□□□□□ -0.46
PTPRE-205ENST00000463727 PPP4R3BQ5MIZ7 849 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTPRE-205ENST00000463727 PRDM10Q9NQV6 1147 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 SNRKQ9NRH2 765 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 FAM177BA6PVY3 158 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 ATP5JP18859 108 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 PAG1Q9NWQ8 432 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 C3P01024 1663 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 APOBRQ0VD83 1088 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 CHRNA2Q15822 529 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 JMYQ8N9B5 988 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 ZNF496Q96IT1 587 aaPredicted RBP12.19□□□□□ -0.46
PTPRE-205ENST00000463727 CLSTN2Q9H4D0 955 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 PTPRUQ92729 1446 aa12.19□□□□□ -0.46
PTPRE-205ENST00000463727 NEMFO60524 1076 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 HAND2P61296 217 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 SAFBQ15424 915 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 ZNF771Q7L3S4 317 aaPredicted RBP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 SLC52A2Q9HAB3 445 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 HOOK1Q9UJC3 728 aaKnown RBP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 AKAP2Q9Y2D5 859 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 NRKQ7Z2Y5 1582 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 PTPDC1A2A3K4 754 aa12.18□□□□□ -0.46
PTPRE-205ENST00000463727 CDK11BP21127 795 aaKnown RBP12.18□□□□□ -0.46
PTPRE-205ENST00000463727 OLFM4Q6UX06 510 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms