RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CCDC87Q9NVE4 849 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 EVA1BQ9NVM1 165 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 FRMD4BQ9Y2L6 1034 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 GPSM3Q9Y4H4 160 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 NCOA2Q15596 1464 aa5.96□□□□□ -1.45
CCDC88A-209ENST00000456975 SHANK2Q9UPX8 1470 aa5.96□□□□□ -1.45
CCDC88A-209ENST00000456975 IQGAP1P46940 1657 aa5.96□□□□□ -1.45
CCDC88A-209ENST00000456975 VWDEQ8N2E2 1590 aa5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 LDHBP07195 334 aaKnown RBP5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 CCNYL3P0C7X3 344 aa5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 NUDT12Q9BQG2 462 aa5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 MRS2Q9HD23 443 aa5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 ZHX1Q9UKY1 873 aaPredicted RBP5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 CCNB3Q8WWL7 1395 aa5.96□□□□□ -1.46
CCDC88A-209ENST00000456975 TREHO43280 583 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 LIG1P18858 919 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 DNAJA1P31689 397 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 APLP1P51693 650 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 CCDC144BQ3MJ40 725 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 PMFBP1Q8TBY8 1022 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 HELQQ8TDG4 1101 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 ZFRQ96KR1 1074 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 STK26Q9P289 416 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 MAGEC2Q9UBF1 373 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 A2ML1A8K2U0 1454 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 SH3BP5O60239 455 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 KIF20AO95235 890 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 CT47B1P0C2W7 299 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 RAB15P59190 212 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 WDR78Q5VTH9 848 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 PIF1Q9H611 641 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 KLHL42Q9P2K6 505 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 KIAA1107Q9UPP5 1409 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 ZMYM3Q14202 1370 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 ADGBQ8N7X0 1667 aa5.95□□□□□ -1.46
CCDC88A-209ENST00000456975 FMR1Q06787 632 aaKnown RBP eCLIP5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 COL19A1Q14993 1142 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 NBPF14Q5TI25 921 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 PTCRAQ6ISU1 281 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 SAMD9LQ8IVG5 1584 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 RBCK1Q9BYM8 510 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 VTI1BQ9UEU0 232 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 MRVI1Q9Y6F6 885 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 XIRP1Q702N8 1843 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 PLXNC1O60486 1568 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 CCDC184Q52MB2 194 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 MAF1Q9H063 256 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 CFDP1Q9UEE9 299 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 PCDHB11Q9Y5F2 797 aa5.94□□□□□ -1.46
CCDC88A-209ENST00000456975 INO80Q9ULG1 1556 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 ATP7AQ04656 1500 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 SORBS3O60504 671 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 ZRANB2O95218 330 aaKnown RBP eCLIP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 ATP2B1P20020 1258 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 EHHADHQ08426 723 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 LMOD3Q0VAK6 560 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 EP400NLQ6ZTU2 488 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 SH3BP5LQ7L8J4 393 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 CCSER2Q9H7U1 834 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 ARHGEF10LQ9HCE6 1279 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 PCDHGB7Q9Y5F8 929 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 PLEKHH2Q8IVE3 1493 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 MIA2Q96PC5 1412 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 SYCP2Q9BX26 1530 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 DEPDC5O75140 1603 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 HMGB1P1B2RPK0 211 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 GPR182O15218 404 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 IPO8O15397 1037 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 PTCD1O75127 700 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 TNNT2P45379 298 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 DMTNQ08495 405 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 FAM160A2Q8N612 972 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 SCG3Q8WXD2 468 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 RNF34Q969K3 372 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 RGS17Q9UGC6 210 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 VPS9D1Q9Y2B5 631 aa5.93□□□□□ -1.46
CCDC88A-209ENST00000456975 SBNO2Q9Y2G9 1366 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 MBD5Q9P267 1494 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 MYOM3Q5VTT5 1437 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 NDUFB5O43674 189 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 SCTRP47872 440 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 DSC3Q14574 896 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 ZNF394Q53GI3 561 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 SMC5Q8IY18 1101 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 TNS4Q8IZW8 715 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 ARMC2Q8NEN0 867 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 CHMP4CQ96CF2 233 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 UNC93B1Q9H1C4 597 aa5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 METTL14Q9HCE5 456 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 ZNF644Q9H582 1327 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-209ENST00000456975 FAM13AO94988 1023 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 PSMD2Q13200 908 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ZRSR2Q15696 482 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ATCAYQ86WG3 371 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 CCDC24Q8N4L8 307 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 PMM1Q92871 262 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 ZNF358Q9NW07 568 aa5.91□□□□□ -1.46
CCDC88A-209ENST00000456975 EMILIN1Q9Y6C2 1016 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms