RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 ZBTB40Q9NUA8 1239 aa14.55□□□□□ -0.08
SCN9A-204ENST00000452182 PDE6BP35913 854 aa14.54□□□□□ -0.08
SCN9A-204ENST00000452182 AAMPQ13685 434 aa14.54□□□□□ -0.08
SCN9A-204ENST00000452182 JARID2Q92833 1246 aaPredicted RBP14.54□□□□□ -0.08
SCN9A-204ENST00000452182 KAZALD1Q96I82 304 aa14.54□□□□□ -0.08
SCN9A-204ENST00000452182 NLRP3Q96P20 1036 aa14.54□□□□□ -0.08
SCN9A-204ENST00000452182 PDZRN3Q9UPQ7 1066 aa14.54□□□□□ -0.08
SCN9A-204ENST00000452182 HCLS1P14317 486 aaPredicted RBP14.53□□□□□ -0.08
SCN9A-204ENST00000452182 SF3B3Q15393 1217 aaKnown RBP14.53□□□□□ -0.08
SCN9A-204ENST00000452182 CRY2Q49AN0 593 aa14.53□□□□□ -0.08
SCN9A-204ENST00000452182 SUCLG2Q96I99 432 aa14.53□□□□□ -0.08
SCN9A-204ENST00000452182 CD2APQ9Y5K6 639 aa14.53□□□□□ -0.08
SCN9A-204ENST00000452182 GNAI2P04899 355 aa14.52□□□□□ -0.08
SCN9A-204ENST00000452182 FOXO4P98177 505 aa14.52□□□□□ -0.08
SCN9A-204ENST00000452182 RABL6Q3YEC7 729 aaPredicted RBP14.52□□□□□ -0.08
SCN9A-204ENST00000452182 CCDC24Q8N4L8 307 aa14.52□□□□□ -0.08
SCN9A-204ENST00000452182 CRBNQ96SW2 442 aa14.52□□□□□ -0.08
SCN9A-204ENST00000452182 KIAA1551Q9HCM1 1747 aa14.52□□□□□ -0.09
SCN9A-204ENST00000452182 CSF1RP07333 972 aa14.52□□□□□ -0.09
SCN9A-204ENST00000452182 CTSWP56202 376 aa14.52□□□□□ -0.09
SCN9A-204ENST00000452182 LRRFIP2Q9Y608 721 aaKnown RBP14.52□□□□□ -0.09
SCN9A-204ENST00000452182 DLEC1Q9Y238 1755 aa14.51□□□□□ -0.09
SCN9A-204ENST00000452182 TGFB2P61812 414 aa14.51□□□□□ -0.09
SCN9A-204ENST00000452182 TTLL11Q8NHH1 800 aa14.51□□□□□ -0.09
SCN9A-204ENST00000452182 BICC1Q9H694 974 aaKnown RBP14.51□□□□□ -0.09
SCN9A-204ENST00000452182 RTL9Q8NET4 1388 aa14.51□□□□□ -0.09
SCN9A-204ENST00000452182 COL11A2P13942 1736 aaPredicted RBP14.5□□□□□ -0.09
SCN9A-204ENST00000452182 MTX1Q13505 466 aa14.5□□□□□ -0.09
SCN9A-204ENST00000452182 CCDC152Q4G0S7 254 aa14.5□□□□□ -0.09
SCN9A-204ENST00000452182 EPHA10Q5JZY3 1008 aa14.5□□□□□ -0.09
SCN9A-204ENST00000452182 C3orf67Q6ZVT6 689 aa14.5□□□□□ -0.09
SCN9A-204ENST00000452182 ANKRD44Q8N8A2 993 aa14.5□□□□□ -0.09
SCN9A-204ENST00000452182 SRGNP10124 158 aa14.49□□□□□ -0.09
SCN9A-204ENST00000452182 HOXA10P31260 410 aaPredicted RBP14.49□□□□□ -0.09
SCN9A-204ENST00000452182 H0YIN7 160 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 LMBR1LQ6UX01 489 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 EXOC6Q8TAG9 804 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 NPR1P16066 1061 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 C2CD5Q86YS7 1000 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 RPAP2Q8IXW5 612 aaPredicted RBP14.48□□□□□ -0.09
SCN9A-204ENST00000452182 MASTLQ96GX5 879 aa14.48□□□□□ -0.09
SCN9A-204ENST00000452182 PPP1R1BQ9UD71 204 aaPredicted RBP14.48□□□□□ -0.09
SCN9A-204ENST00000452182 BRCA1P38398 1863 aaKnown RBP14.47□□□□□ -0.09
SCN9A-204ENST00000452182 NEFLP07196 543 aa14.47□□□□□ -0.09
SCN9A-204ENST00000452182 IRX6P78412 446 aaPredicted RBP14.47□□□□□ -0.09
SCN9A-204ENST00000452182 STYK1Q6J9G0 422 aa14.47□□□□□ -0.09
SCN9A-204ENST00000452182 RPGRQ92834 1020 aaKnown RBP14.47□□□□□ -0.09
SCN9A-204ENST00000452182 CRAMP1Q96RY5 1269 aa14.47□□□□□ -0.09
SCN9A-204ENST00000452182 FHDC1Q9C0D6 1143 aaPredicted RBP14.47□□□□□ -0.09
SCN9A-204ENST00000452182 GREM2Q9H772 168 aa14.47□□□□□ -0.09
SCN9A-204ENST00000452182 SRCAPQ6ZRS2 3230 aa14.46□□□□□ -0.09
SCN9A-204ENST00000452182 ALDH1B1P30837 517 aa14.46□□□□□ -0.09
SCN9A-204ENST00000452182 ATP8B2P98198 1209 aa14.46□□□□□ -0.09
SCN9A-204ENST00000452182 DDX46Q7L014 1031 aaKnown RBP14.46□□□□□ -0.09
SCN9A-204ENST00000452182 RBM17Q96I25 401 aaKnown RBP14.46□□□□□ -0.09
SCN9A-204ENST00000452182 C1orf115Q9H7X2 142 aa14.46□□□□□ -0.09
SCN9A-204ENST00000452182 DPEP1P16444 411 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 KCNA3P22001 575 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 ITGA6P23229 1130 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 IFIT5Q13325 482 aaKnown RBP14.45□□□□□ -0.1
SCN9A-204ENST00000452182 CCDC57Q2TAC2 916 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 FAM161AQ3B820 660 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 CEP85Q6P2H3 762 aa14.45□□□□□ -0.1
SCN9A-204ENST00000452182 ANKRD18BA2A2Z9 1011 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 SRGAP3O43295 1099 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 CHRNA5P30532 468 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 SSH3Q8TE77 659 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 CNKSR1Q969H4 720 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 CDC5LQ99459 802 aaKnown RBP14.44□□□□□ -0.1
SCN9A-204ENST00000452182 SYT17Q9BSW7 474 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 TAF1P21675 1872 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 A0A0G2JLW4 131 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 RFX5P48382 616 aaPredicted RBP14.44□□□□□ -0.1
SCN9A-204ENST00000452182 GRAPQ13588 217 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 KLHL34Q8N239 644 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 GRAPLQ8TC17 118 aaPredicted RBP14.44□□□□□ -0.1
SCN9A-204ENST00000452182 CCDC85AQ96PX6 553 aaPredicted RBP14.44□□□□□ -0.1
SCN9A-204ENST00000452182 SEC31BQ9NQW1 1179 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 CHMP3Q9Y3E7 222 aa14.44□□□□□ -0.1
SCN9A-204ENST00000452182 PNMA6EA0A0J9YXQ4 647 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 BBOX1O75936 387 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 VASPP50552 380 aaPredicted RBP14.43□□□□□ -0.1
SCN9A-204ENST00000452182 ERICH6BQ5W0A0 696 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 TMC4Q7Z404 712 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 COPRSQ9NQ92 184 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 PIM2Q9P1W9 311 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 PCDHB15Q9Y5E8 787 aa14.43□□□□□ -0.1
SCN9A-204ENST00000452182 COL4A1P02462 1669 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 HMMRO75330 724 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 RPS8P62241 208 aaKnown RBP14.42□□□□□ -0.1
SCN9A-204ENST00000452182 SIRT2Q8IXJ6 389 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 NLGN2Q8NFZ4 835 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 CELF1Q92879 486 aaKnown RBP14.42□□□□□ -0.1
SCN9A-204ENST00000452182 ZNF622Q969S3 477 aaKnown RBP eCLIP14.42□□□□□ -0.1
SCN9A-204ENST00000452182 SLX4Q8IY92 1834 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 CACNA1SQ13698 1873 aa14.42□□□□□ -0.1
SCN9A-204ENST00000452182 PTPN12Q05209 780 aaKnown RBP14.41□□□□□ -0.1
SCN9A-204ENST00000452182 ANKRD18AQ8IVF6 992 aa14.41□□□□□ -0.1
SCN9A-204ENST00000452182 TTLL6Q8N841 843 aa14.41□□□□□ -0.1
SCN9A-204ENST00000452182 LRRC37AA6NMS7 1700 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms