RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 MAP7D2Q96T17 732 aa12.58□□□□□ -0.4
SYNE2-206ENST00000441438 CHCHD3Q9NX63 227 aaKnown RBP12.58□□□□□ -0.4
SYNE2-206ENST00000441438 UBR1Q8IWV7 1749 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 PTPRTO14522 1441 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 SRGNP10124 158 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 ATRIPQ8WXE1 791 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 EID1Q9Y6B2 187 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 ARHGAP23Q9P227 1491 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 NOS1P29475 1434 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 GPR37O15354 613 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 TPPPO94811 219 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 WAPLQ7Z5K2 1190 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 HELQQ8TDG4 1101 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
SYNE2-206ENST00000441438 HTATSF1O43719 755 aaKnown RBP12.56□□□□□ -0.4
SYNE2-206ENST00000441438 CCDC175P0C221 793 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 APBA2Q99767 749 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 PPP4R2Q9NY27 417 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 UTP6Q9NYH9 597 aaKnown RBP12.56□□□□□ -0.4
SYNE2-206ENST00000441438 LAMC1P11047 1609 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 TRIM6-TRIM34B2RNG4 842 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 CAPN2P17655 700 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 KIAA1210Q9ULL0 1709 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 A2ML1A8K2U0 1454 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 TSPAN7P41732 249 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 ZNF131P52739 623 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 IRX5P78411 483 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-206ENST00000441438 CCSAPQ6IQ19 270 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-206ENST00000441438 SAMD3Q8N6K7 520 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 AGAP3Q96P47 875 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 PPCSQ9HAB8 311 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 ZNF232Q9UNY5 417 aa12.56□□□□□ -0.4
SYNE2-206ENST00000441438 NWD1Q149M9 1564 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 E9PCH4 1651 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 DNAJC6O75061 913 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 LDLRAD1Q5T700 205 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 USP48Q86UV5 1035 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 CENPTQ96BT3 561 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 VMP1Q96GC9 406 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 MAFFQ9ULX9 164 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 CHMP3Q9Y3E7 222 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 PIK3CAP42336 1068 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 GPSM2P81274 684 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 RAPGEF1Q13905 1077 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 SH3D19Q5HYK7 790 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 IQCEQ6IPM2 695 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 PPP1R18Q6NYC8 613 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 CDC37L1Q7L3B6 337 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 UHMK1Q8TAS1 419 aaKnown RBP12.55□□□□□ -0.4
SYNE2-206ENST00000441438 ADGRB3O60242 1522 aa12.55□□□□□ -0.4
SYNE2-206ENST00000441438 ECEL1O95672 775 aa12.54□□□□□ -0.4
SYNE2-206ENST00000441438 SOGA3Q5TF21 947 aa12.54□□□□□ -0.4
SYNE2-206ENST00000441438 TPM2P07951 284 aa12.54□□□□□ -0.4
SYNE2-206ENST00000441438 BOLA2-SMG1P6H3BVE0 249 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 TRAPPC10P48553 1259 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 MECOMQ03112 1051 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 SMCR8Q8TEV9 937 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 NELL1Q92832 810 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 ZNF219Q9P2Y4 722 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 CFDP1Q9UEE9 299 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 USP25Q9UHP3 1055 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 IL16Q14005 1332 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 SENP3-EIF4A1A0A087X0R7 540 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 JARID2Q92833 1246 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 SMARCC1Q92922 1105 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 TMEM87BQ96K49 555 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 CEP170BQ9Y4F5 1589 aaPredicted RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 BPNT1O95861 308 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 TAF11Q15544 211 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 AMOTQ4VCS5 1084 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 TAS1R3Q7RTX0 852 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 ARHGEF25Q86VW2 580 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 LZTS2Q9BRK4 669 aa12.53□□□□□ -0.4
SYNE2-206ENST00000441438 GTPBP4Q9BZE4 634 aaKnown RBP12.53□□□□□ -0.4
SYNE2-206ENST00000441438 KNDC1Q76NI1 1749 aa12.52□□□□□ -0.4
SYNE2-206ENST00000441438 RASA3Q14644 834 aa12.52□□□□□ -0.4
SYNE2-206ENST00000441438 ELOA2Q8IYF1 753 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-206ENST00000441438 EFCC1Q9HA90 598 aa12.52□□□□□ -0.41
SYNE2-206ENST00000441438 GINM1Q9NU53 330 aa12.52□□□□□ -0.41
SYNE2-206ENST00000441438 MKS1Q9NXB0 559 aa12.52□□□□□ -0.41
SYNE2-206ENST00000441438 SPAG9O60271 1321 aaKnown RBP12.52□□□□□ -0.41
SYNE2-206ENST00000441438 ERVK-7P63135 1459 aa12.52□□□□□ -0.41
SYNE2-206ENST00000441438 VPS72Q15906 364 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 FXNQ16595 210 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 AFAP1Q8N556 730 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 MPP4Q96JB8 637 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 ENAMQ9NRM1 1142 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 EVLQ9UI08 416 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-206ENST00000441438 NAIPQ13075 1403 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 SLC26A4O43511 780 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 RBL2Q08999 1139 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 PPP2R5BQ15173 497 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 ZBTB9Q96C00 473 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 RABL2AQ9UBK7 228 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-206ENST00000441438 A6NJY4 79 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 VAMP4O75379 141 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 HOXC13P31276 330 aa12.51□□□□□ -0.41
SYNE2-206ENST00000441438 INO80DQ53TQ3 878 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-206ENST00000441438 OTUD6AQ7L8S5 288 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms