RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 IFIT1BQ5T764 474 aaKnown RBP19.74■□□□□ 0.75
PTPRF-209ENST00000438120 DNAI2Q9GZS0 605 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 CNPY2Q9Y2B0 182 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 SETDB2Q96T68 719 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 RBM8AQ9Y5S9 174 aaKnown RBP19.74■□□□□ 0.75
PTPRF-209ENST00000438120 CETN1Q12798 172 aa19.74■□□□□ 0.75
PTPRF-209ENST00000438120 HEATR3Q7Z4Q2 680 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 ZBTB43O43298 467 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 HCLS1P14317 486 aaPredicted RBP19.73■□□□□ 0.75
PTPRF-209ENST00000438120 UBE4AQ14139 1066 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 TBC1D32Q96NH3 1257 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 ALG1Q9BT22 464 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 PPM1FP49593 454 aaPredicted RBP19.73■□□□□ 0.75
PTPRF-209ENST00000438120 TRIM47Q96LD4 638 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 PDE1AP54750 535 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 FERMT2Q96AC1 680 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 DHX29Q7Z478 1369 aaKnown RBP19.73■□□□□ 0.75
PTPRF-209ENST00000438120 GOLGA6L10A0A0M3HER8 536 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 MAP9Q49MG5 647 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 BICD1Q96G01 975 aa19.73■□□□□ 0.75
PTPRF-209ENST00000438120 NIP7Q9Y221 180 aaKnown RBP eCLIP19.73■□□□□ 0.759e-8■□□□□ 8.2
PTPRF-209ENST00000438120 CHST3Q7LGC8 479 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 UBE2HP62256 183 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 SLC9C2Q5TAH2 1124 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 Q6ZUG5 572 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 TNNQ9UQP3 1299 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 CCDC91Q7Z6B0 441 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 GRM8O00222 908 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 SYKP43405 635 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 ZSCAN22P10073 491 aaPredicted RBP19.72■□□□□ 0.75
PTPRF-209ENST00000438120 RRAGBQ5VZM2 374 aa19.72■□□□□ 0.75
PTPRF-209ENST00000438120 IL16Q14005 1332 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 MARCKSP29966 332 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 SPECC1Q5M775 1068 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 HELBQ8NG08 1087 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 ALS2CR12Q96Q35 445 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 EXOC1Q9NV70 894 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 RPRD2Q5VT52 1461 aaKnown RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 HOOK3Q86VS8 718 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 SHTN1A0MZ66 631 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 N4BP3O15049 544 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 ECM2O94769 699 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 GSTO1P78417 241 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 JADE2Q9NQC1 790 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 PPIP5K1Q6PFW1 1433 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 EIF4A2Q14240 407 aaKnown RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 ZNF830Q96NB3 372 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-209ENST00000438120 C8orf37Q96NL8 207 aa19.71■□□□□ 0.75
PTPRF-209ENST00000438120 KRT24Q2M2I5 525 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 ZSCAN23Q3MJ62 389 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 TNRQ92752 1358 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 SPDYE4A6NLX3 237 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 TBCAO75347 108 aaKnown RBP19.7■□□□□ 0.74
PTPRF-209ENST00000438120 MRPL50Q8N5N7 158 aaKnown RBP19.7■□□□□ 0.74
PTPRF-209ENST00000438120 JAG2Q9Y219 1238 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 MTHFSDQ2M296 383 aaKnown RBP19.7■□□□□ 0.74
PTPRF-209ENST00000438120 KRT23Q9C075 422 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 RTN1Q16799 776 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 MCMDC2Q4G0Z9 681 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 NAA16Q6N069 864 aaPredicted RBP19.7■□□□□ 0.74
PTPRF-209ENST00000438120 TMEM87AQ8NBN3 555 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 NFATC2IPQ8NCF5 419 aa19.7■□□□□ 0.74
PTPRF-209ENST00000438120 GSDMDP57764 484 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 PSMD1Q99460 953 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 GRM1Q13255 1194 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 SNW1Q13573 536 aaKnown RBP19.69■□□□□ 0.74
PTPRF-209ENST00000438120 CWF19L2Q2TBE0 894 aaKnown RBP19.69■□□□□ 0.74
PTPRF-209ENST00000438120 ESYT1Q9BSJ8 1104 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 NMIQ13287 307 aaPredicted RBP19.69■□□□□ 0.74
PTPRF-209ENST00000438120 ESR2Q92731 530 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 NLRP3Q96P20 1036 aa19.69■□□□□ 0.74
PTPRF-209ENST00000438120 RBM25P49756 843 aaKnown RBP19.68■□□□□ 0.74
PTPRF-209ENST00000438120 KSR2Q6VAB6 950 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 FAM114A1Q8IWE2 563 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 RNF216Q9NWF9 866 aaPredicted RBP19.68■□□□□ 0.74
PTPRF-209ENST00000438120 MIGA1Q8NAN2 632 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 STAT6P42226 847 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 HDAC1Q13547 482 aaPredicted RBP19.68■□□□□ 0.74
PTPRF-209ENST00000438120 KANK3Q6NY19 840 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 MSH6P52701 1360 aa19.68■□□□□ 0.74
PTPRF-209ENST00000438120 ZSCAN16Q9H4T2 348 aaPredicted RBP19.68■□□□□ 0.74
PTPRF-209ENST00000438120 NBPF7P0C2Y1 421 aaPredicted RBP19.67■□□□□ 0.74
PTPRF-209ENST00000438120 STXBP4Q6ZWJ1 553 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 SIRT1Q96EB6 747 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 ATP8B2P98198 1209 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 AKAP4Q5JQC9 854 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 GNG11P61952 73 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 ANO6Q4KMQ2 910 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 USP48Q86UV5 1035 aa19.67■□□□□ 0.74
PTPRF-209ENST00000438120 TSPYL6Q8N831 410 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 ANKRD44Q8N8A2 993 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 ARHGAP45Q92619 1136 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 CCDC174Q6PII3 467 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 PAG1Q9NWQ8 432 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 UBASH3AP57075 661 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 RNF187Q5TA31 235 aaPredicted RBP19.66■□□□□ 0.74
PTPRF-209ENST00000438120 DZIP3Q86Y13 1208 aaKnown RBP19.66■□□□□ 0.74
PTPRF-209ENST00000438120 TTC16Q8NEE8 873 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 ZFYP08048 801 aaPredicted RBP19.66■□□□□ 0.74
PTPRF-209ENST00000438120 MCM3P25205 808 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms