RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 HAUS2Q9NVX0 235 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 SLC52A1Q9NWF4 448 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 SEPT2Q15019 361 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 FCHSD1Q86WN1 690 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 CCDC26Q8TAB7 109 aa8.18□□□□□ -1.1
VPS53-204ENST00000437048 GMNNO75496 209 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 INPP5BP32019 993 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 CPLX4Q7Z7G2 160 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 NKIRAS1Q9NYS0 192 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 BAG4O95429 457 aaKnown RBP8.17□□□□□ -1.1
VPS53-204ENST00000437048 CCDC51Q96ER9 411 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 ZHX1Q9UKY1 873 aaPredicted RBP8.17□□□□□ -1.1
VPS53-204ENST00000437048 ZKSCAN8Q15776 578 aaPredicted RBP8.17□□□□□ -1.1
VPS53-204ENST00000437048 NBPF9Q3BBW0 867 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 RAPGEF4Q8WZA2 1011 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 PPP1R14CQ8TAE6 165 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 GNG11P61952 73 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 HAUS8Q9BT25 410 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 PPP2R1AP30153 589 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 KIF6Q6ZMV9 814 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 ERMNQ8TAM6 284 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 RIC3Q7Z5B4 369 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 SEC63Q9UGP8 760 aaKnown RBP8.17□□□□□ -1.1
VPS53-204ENST00000437048 CECR2Q9BXF3 1484 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 RLBP1P12271 317 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 NCAPGQ9BPX3 1015 aa8.17□□□□□ -1.1
VPS53-204ENST00000437048 BRPF1P55201 1214 aaPredicted RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 TNPO1Q92973 898 aaKnown RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 CCDC27Q2M243 656 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 EFCAB13Q8IY85 973 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 JADE2Q9NQC1 790 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 ZWINTO95229 277 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 CALML4Q96GE6 196 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 ZFP91Q96JP5 570 aaPredicted RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 JAKMIP1Q96N16 626 aaKnown RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 SMC1BQ8NDV3 1235 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 TICAM2Q86XR7 235 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 NUP133Q8WUM0 1156 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 PUS7Q96PZ0 661 aaKnown RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 NMIQ13287 307 aaPredicted RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 RAB3IL1Q8TBN0 382 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 AFAP1L1Q8TED9 768 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 TRIM37O94972 964 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 TRHP20396 242 aaPredicted RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 PSMD7P51665 324 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 CNNM3Q8NE01 707 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 PANK1Q8TE04 598 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 EVI5LQ96CN4 794 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 DRC3Q9H069 523 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 MAATS1Q7Z4T9 603 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 IQCA1Q86XH1 822 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 CCHCR1Q8TD31 782 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 TSC1Q92574 1164 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 NECTIN2Q92692 538 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 CDCA7LQ96GN5 454 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 GNAQP50148 359 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 PPP2R5BQ15173 497 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 IPO4Q8TEX9 1081 aaKnown RBP8.16□□□□□ -1.1
VPS53-204ENST00000437048 GLT8D2Q9H1C3 349 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 SLFN5Q08AF3 891 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 DTNBP1Q96EV8 351 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 POLE3Q9NRF9 147 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 KCNG1Q9UIX4 513 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 NCOA1Q15788 1441 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 CERS3Q8IU89 383 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 HVCN1Q96D96 273 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 NUP58Q9BVL2 599 aa8.16□□□□□ -1.1
VPS53-204ENST00000437048 A0A1W2PRG0 241 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 NAP1L4Q99733 375 aaKnown RBP8.15□□□□□ -1.1
VPS53-204ENST00000437048 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS53-204ENST00000437048 IFT20Q8IY31 132 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 MAIP1Q8WWC4 291 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 BCCIPQ9P287 314 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS53-204ENST00000437048 PSMA7O14818 248 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 SNX16P57768 344 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 MAP7D1Q3KQU3 841 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 ITGB1BP2Q9UKP3 347 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 PABPN1LA6NDY0 278 aaKnown RBP8.15□□□□□ -1.1
VPS53-204ENST00000437048 SRGAP3O43295 1099 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 SPAG5Q96R06 1193 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 ZNF131P52739 623 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 ZNF445P59923 1031 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 TUBB6Q9BUF5 446 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 GAPVD1Q14C86 1478 aa8.15□□□□□ -1.1
VPS53-204ENST00000437048 NT5C2P49902 561 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 CTNNA2P26232 953 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 MYO1AQ9UBC5 1043 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 MICALL1Q8N3F8 863 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 GOLGA5Q8TBA6 731 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 NEBLO76041 1014 aa8.15□□□□□ -1.11
VPS53-204ENST00000437048 NUTM2AQ8IVF1 878 aaPredicted RBP8.15□□□□□ -1.11
VPS53-204ENST00000437048 CEP120Q8N960 986 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 CNNM2Q9H8M5 875 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 MGEA5O60502 916 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 INTS8Q75QN2 995 aaKnown RBP8.14□□□□□ -1.11
VPS53-204ENST00000437048 RUNDC3BQ96NL0 473 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 CALML3P27482 149 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 CALCOCO2Q13137 446 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 FLOT1O75955 427 aa8.14□□□□□ -1.11
VPS53-204ENST00000437048 ARHGAP6O43182 974 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms