RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 RNF34Q969K3 372 aa9.4□□□□□ -0.9
USP54-206ENST00000433394 NUCKS1Q9H1E3 243 aaKnown RBP9.4□□□□□ -0.9
USP54-206ENST00000433394 PCDHGC4Q9Y5F7 938 aa9.4□□□□□ -0.9
USP54-206ENST00000433394 KHNYNO15037 678 aaKnown RBP9.39□□□□□ -0.91
USP54-206ENST00000433394 FAM157BP0CG42 384 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 ZNF76P36508 570 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 LAMC2Q13753 1193 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 CCINQ13939 588 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 GMCL1Q96IK5 515 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 C8orf37Q96NL8 207 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 SETDB2Q96T68 719 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 ZCCHC2Q9C0B9 1178 aaKnown RBP9.39□□□□□ -0.91
USP54-206ENST00000433394 EFCC1Q9HA90 598 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 ATP13A2Q9NQ11 1180 aa9.39□□□□□ -0.91
USP54-206ENST00000433394 EDN3P14138 238 aa9.38□□□□□ -0.91
USP54-206ENST00000433394 FOXR1Q6PIV2 292 aa9.38□□□□□ -0.91
USP54-206ENST00000433394 TMEM63CQ9P1W3 806 aa9.38□□□□□ -0.91
USP54-206ENST00000433394 PHF24Q9UPV7 400 aa9.38□□□□□ -0.91
USP54-206ENST00000433394 KCNQ4P56696 695 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 ZNF787Q6DD87 383 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 KLRG1Q96E93 195 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 C12orf49Q9H741 205 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 FAM8A1Q9UBU6 413 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 TRAK1Q9UPV9 953 aa9.37□□□□□ -0.91
USP54-206ENST00000433394 PTSQ03393 145 aa9.36□□□□□ -0.91
USP54-206ENST00000433394 DCDC2BA2VCK2 349 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 PSAPP07602 524 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 RARAP10276 462 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 GNL2Q13823 731 aaKnown RBP9.35□□□□□ -0.91
USP54-206ENST00000433394 SF3A1Q15459 793 aaKnown RBP9.35□□□□□ -0.91
USP54-206ENST00000433394 KRT25Q7Z3Z0 450 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 GALNT12Q8IXK2 581 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 CFHR5Q9BXR6 569 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 NPHS2Q9NP85 383 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 MARK1Q9P0L2 795 aa9.35□□□□□ -0.91
USP54-206ENST00000433394 SASH3O75995 380 aa9.34□□□□□ -0.91
USP54-206ENST00000433394 HDLBPQ00341 1268 aaKnown RBP9.34□□□□□ -0.91
USP54-206ENST00000433394 USPL1Q5W0Q7 1092 aa9.34□□□□□ -0.91
USP54-206ENST00000433394 C1orf127Q8N9H9 656 aa9.34□□□□□ -0.91
USP54-206ENST00000433394 EPS8L3Q8TE67 593 aaKnown RBP9.34□□□□□ -0.91
USP54-206ENST00000433394 TRERF1Q96PN7 1200 aa9.34□□□□□ -0.91
USP54-206ENST00000433394 CCSER2Q9H7U1 834 aa9.34□□□□□ -0.91
USP54-206ENST00000433394 EREGO14944 169 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 NT5DC4Q86YG4 428 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 TRIM22Q8IYM9 498 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 SPACA7Q96KW9 195 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 EHD4Q9H223 541 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 AAASQ9NRG9 546 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 RNF19AQ9NV58 838 aa9.33□□□□□ -0.92
USP54-206ENST00000433394 SENP3-EIF4A1A0A087X0R7 540 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 POLR3DP05423 398 aaPredicted RBP9.32□□□□□ -0.92
USP54-206ENST00000433394 MAPTP10636 758 aaKnown RBP9.32□□□□□ -0.92
USP54-206ENST00000433394 GSTT1P30711 240 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 C9orf131Q5VYM1 1079 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 HS2ST1Q7LGA3 356 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 BCO2Q9BYV7 579 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 SUV39H2Q9H5I1 410 aa9.32□□□□□ -0.92
USP54-206ENST00000433394 ATXN7L1Q9ULK2 861 aaPredicted RBP9.32□□□□□ -0.92
USP54-206ENST00000433394 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.32□□□□□ -0.92
USP54-206ENST00000433394 SLC35F4A4IF30 521 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 ST8SIA5O15466 376 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 EFSO43281 561 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 FANCCQ00597 558 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 TNP2Q05952 138 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 SFSWAPQ12872 951 aaKnown RBP9.31□□□□□ -0.92
USP54-206ENST00000433394 HYAL2Q12891 473 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 TAF1CQ15572 869 aaPredicted RBP9.31□□□□□ -0.92
USP54-206ENST00000433394 NAALADL2Q58DX5 795 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 NCAPG2Q86XI2 1143 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 CCDC155Q8N6L0 562 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 SREK1Q8WXA9 508 aaKnown RBP9.31□□□□□ -0.92
USP54-206ENST00000433394 GSX2Q9BZM3 304 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 TGIF2Q9GZN2 237 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 ZFYVE1Q9HBF4 777 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 CNTN3Q9P232 1028 aa9.31□□□□□ -0.92
USP54-206ENST00000433394 USP17L7P0C7H9 530 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 NFKB1P19838 968 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 TARSP26639 723 aaKnown RBP9.3□□□□□ -0.92
USP54-206ENST00000433394 IRS1P35568 1242 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 PLAURQ03405 335 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 SPEM2Q0P670 501 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 PCSK7Q16549 785 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 OR13H1Q8NG92 308 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 DRC1Q96MC2 740 aa9.3□□□□□ -0.92
USP54-206ENST00000433394 SOBPA7XYQ1 873 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 SOX18P35713 384 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 NXPE4Q6UWF7 544 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 PI16Q6UXB8 463 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 BHMTQ93088 406 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 RBSNQ9H1K0 784 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 CHRDQ9H2X0 955 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 PRR12Q9ULL5 1215 aa9.29□□□□□ -0.92
USP54-206ENST00000433394 MMP20O60882 483 aa9.28□□□□□ -0.92
USP54-206ENST00000433394 XRCC5P13010 732 aaKnown RBP9.28□□□□□ -0.92
USP54-206ENST00000433394 GRNP28799 593 aaKnown RBP9.28□□□□□ -0.92
USP54-206ENST00000433394 ST13P50502 369 aaKnown RBP9.28□□□□□ -0.92
USP54-206ENST00000433394 OSBPL7Q9BZF2 842 aa9.28□□□□□ -0.92
USP54-206ENST00000433394 TLR7Q9NYK1 1049 aaKnown RBP9.28□□□□□ -0.92
USP54-206ENST00000433394 KANSL3Q9P2N6 904 aa9.28□□□□□ -0.92
USP54-206ENST00000433394 TTF2Q9UNY4 1162 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms