RNA–Protein interactions for RNA: ENST00000431803.2

CDC42-IT1-201, CDC42 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene CDC42-IT1, Length 692 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-IT1-201ENST00000431803 HTRA3P83110 453 aa12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 FKBP4Q02790 459 aaKnown RBP eCLIP12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 OLFM4Q6UX06 510 aa12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 NUTM1Q86Y26 1132 aa12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 ZNF34Q8IZ26 560 aa12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 ZBTB3Q9H5J0 574 aa12.36□□□□□ -0.43
CDC42-IT1-201ENST00000431803 NTSR2O95665 410 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 GPTP24298 496 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 ALDH1B1P30837 517 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 GIGYF2Q6Y7W6 1299 aaKnown RBP12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 RTKN2Q8IZC4 609 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 HS6ST3Q8IZP7 471 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 FBXO22Q8NEZ5 403 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 KLRG1Q96E93 195 aa12.35□□□□□ -0.43
CDC42-IT1-201ENST00000431803 DDNO94850 711 aaPredicted RBP12.34□□□□□ -0.43
CDC42-IT1-201ENST00000431803 HOXA10P31260 410 aaPredicted RBP12.34□□□□□ -0.43
CDC42-IT1-201ENST00000431803 PROSER3Q2NL68 480 aa12.34□□□□□ -0.43
CDC42-IT1-201ENST00000431803 SUSD4Q5VX71 490 aa12.34□□□□□ -0.43
CDC42-IT1-201ENST00000431803 JMYQ8N9B5 988 aa12.34□□□□□ -0.43
CDC42-IT1-201ENST00000431803 CHL1O00533 1208 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 EIF2S2P20042 333 aaKnown RBP12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 PARP10Q53GL7 1025 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 IFFO2Q5TF58 517 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 CCDC146Q8IYE0 955 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 RUNDC1Q96C34 613 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 PSMD1Q99460 953 aa12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ZNF277Q9NRM2 450 aaPredicted RBP12.33□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ANXA1P04083 346 aa12.32□□□□□ -0.44
CDC42-IT1-201ENST00000431803 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ADAMTS8Q9UP79 889 aa12.32□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ZNF541Q9H0D2 1346 aa12.32□□□□□ -0.44
CDC42-IT1-201ENST00000431803 SCN4AP35499 1836 aa12.32□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ANKRD36CQ5JPF3 1778 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 IQCA1LA6NCM1 817 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 IARSP41252 1262 aaKnown RBP12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 WDR43Q15061 677 aaKnown RBP eCLIP12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 NEUROD2Q15784 382 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 KRT24Q2M2I5 525 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 CC2D2BQ6DHV5 1058 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 PPP1R42Q7Z4L9 355 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 FAM163AQ96GL9 167 aaPredicted RBP12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 CRAMP1Q96RY5 1269 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 TMEM121BQ9BXQ6 578 aaPredicted RBP12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 PRKRIP1Q9H875 184 aaPredicted RBP12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 COL4A5P29400 1685 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 RNF123Q5XPI4 1314 aa12.31□□□□□ -0.44
CDC42-IT1-201ENST00000431803 FZD9O00144 591 aa12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 SLC10A5Q5PT55 438 aa12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 COPS6Q7L5N1 327 aa12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 MICALL2Q8IY33 904 aa12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 SYNE4Q8N205 404 aa12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 DDX21Q9NR30 783 aaKnown RBP eCLIP12.3□□□□□ -0.44
CDC42-IT1-201ENST00000431803 ADAMTSL1Q8N6G6 1762 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 HOXB7P09629 217 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 GRIPAP1Q4V328 841 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 HSP90AB3PQ58FF7 597 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 SLC51AQ86UW1 340 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 XAGE3Q8WTP9 111 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 NECTIN2Q92692 538 aa12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 RBM17Q96I25 401 aaKnown RBP12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 UTP14AQ9BVJ6 771 aaKnown RBP12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 TAF1DQ9H5J8 278 aaPredicted RBP12.29□□□□□ -0.44
CDC42-IT1-201ENST00000431803 PPEF1O14829 653 aaPredicted RBP12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 NLRP10Q86W26 655 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 LDHDQ86WU2 507 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 CFAP44Q96MT7 982 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 NLRP3Q96P20 1036 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 CHPF2Q9P2E5 772 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 LAMB2P55268 1798 aa12.28□□□□□ -0.44
CDC42-IT1-201ENST00000431803 AIMP1Q12904 312 aaKnown RBP12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 TCIRG1Q13488 830 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 HDGFL1Q5TGJ6 251 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 GPC2Q8N158 579 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 HACL1Q9UJ83 578 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 LAS1LQ9Y4W2 734 aaKnown RBP12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 ABCC4O15439 1325 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 PASKQ96RG2 1323 aa12.27□□□□□ -0.45
CDC42-IT1-201ENST00000431803 ZNF853P0CG23 659 aa12.26□□□□□ -0.45
CDC42-IT1-201ENST00000431803 EPHX2P34913 555 aa12.26□□□□□ -0.45
CDC42-IT1-201ENST00000431803 JDP2Q8WYK2 163 aa12.26□□□□□ -0.45
CDC42-IT1-201ENST00000431803 DBF4Q9UBU7 674 aaPredicted RBP12.26□□□□□ -0.45
CDC42-IT1-201ENST00000431803 ATP6V0A2Q9Y487 856 aa12.26□□□□□ -0.45
CDC42-IT1-201ENST00000431803 PLBD2Q8NHP8 589 aa12.25□□□□□ -0.45
CDC42-IT1-201ENST00000431803 MBIPQ9NS73 344 aa12.25□□□□□ -0.45
CDC42-IT1-201ENST00000431803 SH3TC1Q8TE82 1336 aa12.25□□□□□ -0.45
CDC42-IT1-201ENST00000431803 LTBP1Q14766 1721 aa12.25□□□□□ -0.45
CDC42-IT1-201ENST00000431803 TCERG1O14776 1098 aaKnown RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 ITGBL1O95965 494 aaPredicted RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 HCLS1P14317 486 aaPredicted RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 LCE2DQ5TA82 110 aaPredicted RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 DUSP27Q5VZP5 1158 aa12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 PNMA8AQ86V59 439 aaPredicted RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 DDX60Q8IY21 1712 aaKnown RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 LARGE2Q8N3Y3 721 aa12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 RTFDC1Q9BY42 306 aaPredicted RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 VPS33BQ9H267 617 aa12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 IFT57Q9NWB7 429 aa12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 TRMT112Q9UI30 125 aaKnown RBP12.24□□□□□ -0.45
CDC42-IT1-201ENST00000431803 LRRC37AA6NMS7 1700 aa12.23□□□□□ -0.45
CDC42-IT1-201ENST00000431803 APAF1O14727 1248 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms