RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 HDAC9Q9UKV0 1011 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 FERP16591 822 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 TBC1D9Q6ZT07 1266 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 NECAB1Q8N987 351 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 UTP14AQ9BVJ6 771 aaKnown RBP17.64■□□□□ 0.41
PTPRF-206ENST00000429895 CCDC175P0C221 793 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 GJC1P36383 396 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 PPP1R14CQ8TAE6 165 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 CTR9Q6PD62 1173 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 EFCAB5A4FU69 1503 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 UQCRFS1P1P0C7P4 283 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 FBLN1P23142 703 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 CCDC102BQ68D86 513 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 TBC1D5Q92609 795 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 CALM1P0DP23 149 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 CALM2P0DP24 149 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 CALM3P0DP25 149 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 ERMNQ8TAM6 284 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 FAM212AQ96EL1 285 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 PIK3R4Q99570 1358 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 ANKRD13DQ6ZTN6 518 aa17.63■□□□□ 0.41
PTPRF-206ENST00000429895 STAT6P42226 847 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 MRVI1Q9Y6F6 885 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 IKBKGQ9Y6K9 419 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 N4BP3O15049 544 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 MCM5P33992 734 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 OTUD6BQ8N6M0 293 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 WDR97A6NE52 1622 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 LRRC27Q9C0I9 530 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 CHPF2Q9P2E5 772 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 ADCY5O95622 1261 aa17.62■□□□□ 0.41
PTPRF-206ENST00000429895 SLC39A6Q13433 755 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 GIGYF2Q6Y7W6 1299 aaKnown RBP17.61■□□□□ 0.41
PTPRF-206ENST00000429895 BRF1Q92994 677 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 FAM107BQ9H098 131 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 RNF216Q9NWF9 866 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-206ENST00000429895 C8orf37Q96NL8 207 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 FAM135AQ9P2D6 1515 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 KANK3Q6NY19 840 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 PPM1EQ8WY54 764 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 TRERF1Q96PN7 1200 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 TTC21BQ7Z4L5 1316 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 OGFOD1Q8N543 542 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 SMARCC2Q8TAQ2 1214 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 SMARCC1Q92922 1105 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-206ENST00000429895 TCEANC2Q96MN5 208 aa17.61■□□□□ 0.41
PTPRF-206ENST00000429895 TMEM110-MUSTN1A8MSY1 372 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 AKNAD1Q5T1N1 836 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 TBC1D2Q9BYX2 928 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 ACEP12821 1306 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 SNW1Q13573 536 aaKnown RBP17.6■□□□□ 0.41
PTPRF-206ENST00000429895 PYM1Q9BRP8 204 aaKnown RBP17.6■□□□□ 0.41
PTPRF-206ENST00000429895 ALG1Q9BT22 464 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 SBNO2Q9Y2G9 1366 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 ZBTB43O43298 467 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 GSDMDP57764 484 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 KIAA0753Q2KHM9 967 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 XAGE3Q8WTP9 111 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 KRT23Q9C075 422 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 AKR1B10O60218 316 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 CCDC141Q6ZP82 1450 aa17.6■□□□□ 0.41
PTPRF-206ENST00000429895 KRT13P13646 458 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 NAPAP54920 295 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 PAIP2Q9BPZ3 127 aaKnown RBP17.59■□□□□ 0.41
PTPRF-206ENST00000429895 CAMSAP2Q08AD1 1489 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 SYKP43405 635 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 ZCRB1Q8TBF4 217 aaKnown RBP17.59■□□□□ 0.41
PTPRF-206ENST00000429895 NIP7Q9Y221 180 aaKnown RBP eCLIP17.59■□□□□ 0.419e-8■□□□□ 8.2
PTPRF-206ENST00000429895 A0A1W2PRG0 241 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 NBPF7P0C2Y1 421 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-206ENST00000429895 NAA16Q6N069 864 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-206ENST00000429895 TCHPQ9BT92 498 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 ZBTB21Q9ULJ3 1066 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 IDI1Q13907 227 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 RTN1Q16799 776 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 SPAG5Q96R06 1193 aa17.59■□□□□ 0.41
PTPRF-206ENST00000429895 RIMBP2O15034 1052 aa17.58■□□□□ 0.41
PTPRF-206ENST00000429895 ZNF165P49910 485 aa17.58■□□□□ 0.41
PTPRF-206ENST00000429895 CGNQ9P2M7 1197 aaKnown RBP17.58■□□□□ 0.41
PTPRF-206ENST00000429895 ATP2C2O75185 946 aa17.58■□□□□ 0.41
PTPRF-206ENST00000429895 ATP2B3Q16720 1220 aa17.58■□□□□ 0.41
PTPRF-206ENST00000429895 RMND1Q9NWS8 449 aa17.58■□□□□ 0.41
PTPRF-206ENST00000429895 TTC22Q5TAA0 569 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 HMG20BQ9P0W2 317 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 MICALCLQ6ZW33 695 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 ADGRL1O94910 1474 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 GNG11P61952 73 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 ESR2Q92731 530 aa17.58■□□□□ 0.4
PTPRF-206ENST00000429895 ZFP91Q96JP5 570 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-206ENST00000429895 NLRP3Q96P20 1036 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 ARID5AQ03989 594 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 GIMAP6Q6P9H5 292 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 COPS6Q7L5N1 327 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 JAG2Q9Y219 1238 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 RHPN1Q8TCX5 695 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 NCAPD3P42695 1498 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 CCDC172P0C7W6 258 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 MARCKSP29966 332 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-206ENST00000429895 ZNF804AQ7Z570 1209 aa17.57■□□□□ 0.4
PTPRF-206ENST00000429895 UBAP1LF5GYI3 381 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms