RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CAMTA1Q9Y6Y1 1673 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 FSD2A1L4K1 749 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 JAK2O60674 1132 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 HCLS1P14317 486 aaPredicted RBP10.05□□□□□ -0.8
CD44-208ENST00000428726 WASHC4Q2M389 1173 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 PIGBQ92521 554 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 ZNF830Q96NB3 372 aaPredicted RBP10.05□□□□□ -0.8
CD44-208ENST00000428726 RBSNQ9H1K0 784 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 NCOA5Q9HCD5 579 aaKnown RBP10.05□□□□□ -0.8
CD44-208ENST00000428726 TMOD3Q9NYL9 352 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 DENND2AQ9ULE3 1009 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 ESPNB1AK53 854 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 RXRAP19793 462 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 GJB2P29033 226 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 DNM1Q05193 864 aaKnown RBP10.04□□□□□ -0.8
CD44-208ENST00000428726 ME3Q16798 604 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 ZSCAN23Q3MJ62 389 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 PTF1AQ7RTS3 328 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 SLC51AQ86UW1 340 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 GJB4Q9NTQ9 266 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 SMC3Q9UQE7 1217 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 TAF5LO75529 589 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 IL2RBP14784 551 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 HSPA4P34932 840 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 MRE11P49959 708 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 USP48Q86UV5 1035 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 ERCC4Q92889 916 aaPredicted RBP10.04□□□□□ -0.8
CD44-208ENST00000428726 TPCN1Q9ULQ1 816 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 TUBGCP6Q96RT7 1819 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 LMTK3Q96Q04 1460 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 SCARF1Q14162 830 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 TNNI3KQ59H18 835 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 CREB3L3Q68CJ9 461 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 OTUD7BQ6GQQ9 843 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 FPGT-TNNI3KV9GXZ4 949 aa10.04□□□□□ -0.8
CD44-208ENST00000428726 HSP90AB4PQ58FF6 505 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 GPATCH3Q96I76 525 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 FTOQ9C0B1 505 aaKnown RBP eCLIP10.03□□□□□ -0.8
CD44-208ENST00000428726 HDAC5Q9UQL6 1122 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 HEG1Q9ULI3 1381 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 KCNQ2O43526 872 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 SYT1P21579 422 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 NASPP49321 788 aaPredicted RBP10.03□□□□□ -0.8
CD44-208ENST00000428726 CCDC144CPQ8IYA2 1237 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 DNAJC5Q9H3Z4 198 aa10.03□□□□□ -0.8
CD44-208ENST00000428726 ALDH1L1O75891 902 aa10.02□□□□□ -0.8
CD44-208ENST00000428726 NUCB2P80303 420 aa10.02□□□□□ -0.8
CD44-208ENST00000428726 SKOR2Q2VWA4 1001 aaPredicted RBP10.02□□□□□ -0.8
CD44-208ENST00000428726 CWC22Q9HCG8 908 aaKnown RBP10.02□□□□□ -0.8
CD44-208ENST00000428726 ZBTB1Q9Y2K1 713 aa10.02□□□□□ -0.8
CD44-208ENST00000428726 ALS2Q96Q42 1657 aa10.02□□□□□ -0.81
CD44-208ENST00000428726 GIMAP6Q6P9H5 292 aa10.02□□□□□ -0.81
CD44-208ENST00000428726 CCDC82Q8N4S0 544 aa10.02□□□□□ -0.81
CD44-208ENST00000428726 RAD50Q92878 1312 aa10.02□□□□□ -0.81
CD44-208ENST00000428726 SLC27A2O14975 620 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 CLEC17AQ6ZS10 378 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 EPB41L2O43491 1005 aaKnown RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 APPP05067 770 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 HSP90AA2PQ14568 343 aaPredicted RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 BRF1Q92994 677 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 SLC4A9Q96Q91 983 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 CWC25Q9NXE8 425 aaPredicted RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 CYP46A1Q9Y6A2 500 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 ADAMTS7Q9UKP4 1686 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 SIPA1L3O60292 1781 aaPredicted RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 A0A1B0GUL7 405 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 ZKSCAN1P17029 563 aaPredicted RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 ANAPC15P60006 121 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 ST3GAL1Q11201 340 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 MTX1Q13505 466 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 CDC37L1Q7L3B6 337 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 LRP10Q7Z4F1 713 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 C17orf53Q8N3J3 647 aaPredicted RBP10.01□□□□□ -0.81
CD44-208ENST00000428726 EVI5LQ96CN4 794 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 CCDC171Q6TFL3 1326 aa10.01□□□□□ -0.81
CD44-208ENST00000428726 MCM2P49736 904 aa10□□□□□ -0.81
CD44-208ENST00000428726 CCDC57Q2TAC2 916 aa10□□□□□ -0.81
CD44-208ENST00000428726 CKAP2LQ8IYA6 745 aa10□□□□□ -0.81
CD44-208ENST00000428726 IDH1O75874 414 aaKnown RBP10□□□□□ -0.81
CD44-208ENST00000428726 APOBRQ0VD83 1088 aa10□□□□□ -0.81
CD44-208ENST00000428726 LARP1BQ659C4 914 aaKnown RBP10□□□□□ -0.81
CD44-208ENST00000428726 NKX2-3Q8TAU0 364 aa10□□□□□ -0.81
CD44-208ENST00000428726 GREM2Q9H772 168 aa10□□□□□ -0.81
CD44-208ENST00000428726 TRMT112Q9UI30 125 aaKnown RBP10□□□□□ -0.81
CD44-208ENST00000428726 ISY1Q9ULR0 285 aaKnown RBP10□□□□□ -0.81
CD44-208ENST00000428726 LIMCH1Q9UPQ0 1083 aa10□□□□□ -0.81
CD44-208ENST00000428726 COL15A1P39059 1388 aa10□□□□□ -0.81
CD44-208ENST00000428726 DCCP43146 1447 aa10□□□□□ -0.81
CD44-208ENST00000428726 WDR17Q8IZU2 1322 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 IFIT1P09914 478 aaKnown RBP9.99□□□□□ -0.81
CD44-208ENST00000428726 FOXO4P98177 505 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 BLOC1S2Q6QNY1 142 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 SEC31BQ9NQW1 1179 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 SMIM22K7EJ46 135 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 STX6O43752 255 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 RFX5P48382 616 aaPredicted RBP9.99□□□□□ -0.81
CD44-208ENST00000428726 PLBD2Q8NHP8 589 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 CNNM1Q9NRU3 951 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 TOMM22Q9NS69 142 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms