RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 CCDC8Q9H0W5 538 aaPredicted RBP25.09■■□□□ 1.61
USP48-205ENST00000421625 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.09■■□□□ 1.61
USP48-205ENST00000421625 V9GYY5 206 aaPredicted RBP25.09■■□□□ 1.61
USP48-205ENST00000421625 ANKRD1Q15327 319 aa25.08■■□□□ 1.61
USP48-205ENST00000421625 TLR7Q9NYK1 1049 aaKnown RBP25.08■■□□□ 1.61
USP48-205ENST00000421625 PIK3C2AO00443 1686 aa25.08■■□□□ 1.61
USP48-205ENST00000421625 LGR6Q9HBX8 967 aa25.08■■□□□ 1.61
USP48-205ENST00000421625 CDC25BP30305 580 aa25.08■■□□□ 1.6
USP48-205ENST00000421625 IQCB1Q15051 598 aa25.08■■□□□ 1.6
USP48-205ENST00000421625 ANKLE2Q86XL3 938 aa25.07■■□□□ 1.6
USP48-205ENST00000421625 EAF2Q96CJ1 260 aaPredicted RBP25.07■■□□□ 1.6
USP48-205ENST00000421625 C9orf78Q9NZ63 289 aaPredicted RBP25.07■■□□□ 1.6
USP48-205ENST00000421625 ZNF589Q86UQ0 364 aaPredicted RBP25.07■■□□□ 1.6
USP48-205ENST00000421625 MORC2Q9Y6X9 1032 aaPredicted RBP25.07■■□□□ 1.6
USP48-205ENST00000421625 RESTQ13127 1097 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 BOLA2Q9H3K6 86 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 ZNF215Q9UL58 517 aaPredicted RBP25.06■■□□□ 1.6
USP48-205ENST00000421625 GABPB1Q06547 395 aaPredicted RBP25.06■■□□□ 1.6
USP48-205ENST00000421625 RNF20Q5VTR2 975 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 ERC1Q8IUD2 1116 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 BRF1Q92994 677 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 FSD1Q9BTV5 496 aa25.06■■□□□ 1.6
USP48-205ENST00000421625 A0A087WWV3 80 aa25.05■■□□□ 1.6
USP48-205ENST00000421625 GOLGA6L19H0YKK7 550 aa25.05■■□□□ 1.6
USP48-205ENST00000421625 SASH1O94885 1247 aa25.05■■□□□ 1.6
USP48-205ENST00000421625 CEBPZQ03701 1054 aaKnown RBP25.05■■□□□ 1.6
USP48-205ENST00000421625 SLFN14P0C7P3 912 aa25.05■■□□□ 1.6
USP48-205ENST00000421625 CWF19L2Q2TBE0 894 aaKnown RBP25.05■■□□□ 1.6
USP48-205ENST00000421625 KMT5BQ4FZB7 885 aa25.05■■□□□ 1.6
USP48-205ENST00000421625 HIP1O00291 1037 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 MAP3K2Q9Y2U5 619 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 SNRKQ9NRH2 765 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 USP16Q9Y5T5 823 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 CEMIPQ8WUJ3 1361 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 DNAJC5Q9H3Z4 198 aa25.04■■□□□ 1.6
USP48-205ENST00000421625 TRMT1Q9NXH9 659 aaKnown RBP25.04■■□□□ 1.6
USP48-205ENST00000421625 RGPD8O14715 1765 aaPredicted RBP25.03■■□□□ 1.6
USP48-205ENST00000421625 SKILP12757 684 aa25.03■■□□□ 1.6
USP48-205ENST00000421625 RBM6P78332 1123 aaKnown RBP25.03■■□□□ 1.6
USP48-205ENST00000421625 SARM1Q6SZW1 724 aa25.03■■□□□ 1.6
USP48-205ENST00000421625 NYAP1Q6ZVC0 841 aa25.03■■□□□ 1.6
USP48-205ENST00000421625 ALDH8A1Q9H2A2 487 aaPredicted RBP25.03■■□□□ 1.6
USP48-205ENST00000421625 MED23Q9ULK4 1368 aa25.03■■□□□ 1.6
USP48-205ENST00000421625 PTPN14Q15678 1187 aa25.03■■□□□ 1.6
USP48-205ENST00000421625 FILIP1Q7Z7B0 1213 aa25.02■■□□□ 1.6
USP48-205ENST00000421625 GTF3C6Q969F1 213 aa25.02■■□□□ 1.6
USP48-205ENST00000421625 MRFAP1L1Q96HT8 127 aa25.02■■□□□ 1.6
USP48-205ENST00000421625 PROSER3Q2NL68 480 aa25.01■■□□□ 1.59
USP48-205ENST00000421625 FTOQ9C0B1 505 aaKnown RBP eCLIP25.01■■□□□ 1.59
USP48-205ENST00000421625 GIGYF1O75420 1035 aaPredicted RBP25.01■■□□□ 1.59
USP48-205ENST00000421625 ZNF397Q8NF99 534 aaPredicted RBP25.01■■□□□ 1.59
USP48-205ENST00000421625 EDC3Q96F86 508 aaKnown RBP25.01■■□□□ 1.59
USP48-205ENST00000421625 CCDC69A6NI79 296 aa25■■□□□ 1.59
USP48-205ENST00000421625 H3BQV1 296 aa25■■□□□ 1.59
USP48-205ENST00000421625 HOXB7P09629 217 aa25■■□□□ 1.59
USP48-205ENST00000421625 FOSBP53539 338 aa25■■□□□ 1.59
USP48-205ENST00000421625 CCZ1BP86790 482 aa25■■□□□ 1.59
USP48-205ENST00000421625 CCZ1P86791 482 aaPredicted RBP25■■□□□ 1.59
USP48-205ENST00000421625 IFFO2Q5TF58 517 aa25■■□□□ 1.59
USP48-205ENST00000421625 SIL1Q9H173 461 aa25■■□□□ 1.59
USP48-205ENST00000421625 CAVIN2O95810 425 aa25■■□□□ 1.59
USP48-205ENST00000421625 SUCLG2Q96I99 432 aa25■■□□□ 1.59
USP48-205ENST00000421625 ELF2Q15723 593 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 GOLPH3LQ9H4A5 285 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 STX1AQ16623 288 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 DIP2AQ14689 1571 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 G3BP1Q13283 466 aaKnown RBP eCLIP24.99■■□□□ 1.59
USP48-205ENST00000421625 FBXO38Q6PIJ6 1188 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 KRT222Q8N1A0 295 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 KAZALD1Q96I82 304 aa24.99■■□□□ 1.59
USP48-205ENST00000421625 CCAR1Q8IX12 1150 aaKnown RBP24.98■■□□□ 1.59
USP48-205ENST00000421625 ERBB3P21860 1342 aa24.98■■□□□ 1.59
USP48-205ENST00000421625 NEMFO60524 1076 aa24.98■■□□□ 1.59
USP48-205ENST00000421625 TAF5LO75529 589 aa24.98■■□□□ 1.59
USP48-205ENST00000421625 ALDH1L1O75891 902 aa24.98■■□□□ 1.59
USP48-205ENST00000421625 DHX40Q8IX18 779 aaKnown RBP24.98■■□□□ 1.59
USP48-205ENST00000421625 BICC1Q9H694 974 aaKnown RBP24.98■■□□□ 1.59
USP48-205ENST00000421625 HMG20BQ9P0W2 317 aa24.98■■□□□ 1.59
USP48-205ENST00000421625 COL15A1P39059 1388 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 HSP90B1P14625 803 aaKnown RBP24.97■■□□□ 1.59
USP48-205ENST00000421625 TERF2Q15554 542 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 BECN2A8MW95 431 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 TSGA10IPQ3SY00 556 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 Q6ZUG5 572 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 KLHDC4Q8TBB5 520 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 ERCC4Q92889 916 aaPredicted RBP24.97■■□□□ 1.59
USP48-205ENST00000421625 CFAP45Q9UL16 551 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 KDM3BQ7LBC6 1761 aa24.97■■□□□ 1.59
USP48-205ENST00000421625 MED1Q15648 1581 aaPredicted RBP24.97■■□□□ 1.59
USP48-205ENST00000421625 JCADQ9P266 1359 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 BTBD11A6QL63 1104 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 ADD1P35611 737 aaKnown RBP24.96■■□□□ 1.59
USP48-205ENST00000421625 PDE4CQ08493 712 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 C14orf37Q86TY3 774 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 CCAR2Q8N163 923 aaKnown RBP24.96■■□□□ 1.59
USP48-205ENST00000421625 LRRC2Q9BYS8 371 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 DBF4Q9UBU7 674 aaPredicted RBP24.96■■□□□ 1.59
USP48-205ENST00000421625 FBXW7Q969H0 707 aa24.96■■□□□ 1.59
USP48-205ENST00000421625 CHGBP05060 677 aa24.95■■□□□ 1.59
USP48-205ENST00000421625 NEK1Q96PY6 1258 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms