RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RNF20Q5VTR2 975 aa15.95■□□□□ 0.14
VPS54-203ENST00000409558 HELBQ8NG08 1087 aaPredicted RBP15.95■□□□□ 0.14
VPS54-203ENST00000409558 BICD2Q8TD16 824 aa15.95■□□□□ 0.14
VPS54-203ENST00000409558 INTS4Q96HW7 963 aaKnown RBP15.95■□□□□ 0.14
VPS54-203ENST00000409558 GOLGB1Q14789 3259 aaKnown RBP15.95■□□□□ 0.14
VPS54-203ENST00000409558 FAM184AQ8NB25 1140 aa15.95■□□□□ 0.14
VPS54-203ENST00000409558 ERCC4Q92889 916 aaPredicted RBP15.95■□□□□ 0.14
VPS54-203ENST00000409558 FMN2Q9NZ56 1722 aa15.94■□□□□ 0.14
VPS54-203ENST00000409558 Q6ZUG5 572 aa15.94■□□□□ 0.14
VPS54-203ENST00000409558 TTC12Q9H892 705 aaPredicted RBP15.94■□□□□ 0.14
VPS54-203ENST00000409558 ZSCAN30Q86W11 494 aa15.94■□□□□ 0.14
VPS54-203ENST00000409558 FTOQ9C0B1 505 aaKnown RBP eCLIP15.94■□□□□ 0.14
VPS54-203ENST00000409558 GPHNQ9NQX3 736 aaPredicted RBP15.94■□□□□ 0.14
VPS54-203ENST00000409558 SNAP23O00161 211 aa15.94■□□□□ 0.14
VPS54-203ENST00000409558 NECTIN1Q15223 517 aa15.94■□□□□ 0.14
VPS54-203ENST00000409558 ASAP1Q9ULH1 1129 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 RPAP1Q9BWH6 1393 aaPredicted RBP15.93■□□□□ 0.14
VPS54-203ENST00000409558 MEGF6O75095 1541 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 APOBRQ0VD83 1088 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 ST3GAL1Q11201 340 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 MTMR6Q9Y217 621 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 C1orf167Q5SNV9 1468 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 APPP05067 770 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 OTUD7BQ6GQQ9 843 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 CADPS2Q86UW7 1296 aa15.93■□□□□ 0.14
VPS54-203ENST00000409558 AOX1Q06278 1338 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 IFIT1P09914 478 aaKnown RBP15.92■□□□□ 0.14
VPS54-203ENST00000409558 CHMP4CQ96CF2 233 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 TBC1D2BQ9UPU7 963 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 PSMA5P28066 241 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 ADORA1P30542 326 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 DNAJC10Q8IXB1 793 aa15.92■□□□□ 0.14
VPS54-203ENST00000409558 CWC25Q9NXE8 425 aaPredicted RBP15.92■□□□□ 0.14
VPS54-203ENST00000409558 KDM6AO15550 1401 aaPredicted RBP15.92■□□□□ 0.14
VPS54-203ENST00000409558 LTN1O94822 1766 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 MTX1Q13505 466 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 MAP4K1Q92918 833 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 NEK1Q96PY6 1258 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 ZSWIM6Q9HCJ5 1215 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 NALCNQ8IZF0 1738 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 CLEC17AQ6ZS10 378 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 ISY1Q9ULR0 285 aaKnown RBP15.91■□□□□ 0.14
VPS54-203ENST00000409558 CCDC57Q2TAC2 916 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 DRC7Q8IY82 874 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 FAM13BQ9NYF5 915 aa15.91■□□□□ 0.14
VPS54-203ENST00000409558 TAF5LO75529 589 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 RXRAP19793 462 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 CYP21A2P08686 494 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 LIG1P18858 919 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 A0A1B0GUL7 405 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 CCDC144CPQ8IYA2 1237 aa15.9■□□□□ 0.14
VPS54-203ENST00000409558 ADAMTS2O95450 1211 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 TTC6Q86TZ1 520 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 SPATA32Q96LK8 384 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 TMOD3Q9NYL9 352 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 TSC1Q92574 1164 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 ACSBG1Q96GR2 724 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 CEP126Q9P2H0 1117 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 IQSEC3Q9UPP2 1182 aaPredicted RBP15.89■□□□□ 0.13
VPS54-203ENST00000409558 ADCY5O95622 1261 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 BRINP3Q76B58 766 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 TOMM22Q9NS69 142 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 GJB4Q9NTQ9 266 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 ATP6V1DQ9Y5K8 247 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 ZNF335Q9H4Z2 1342 aaPredicted RBP15.89■□□□□ 0.13
VPS54-203ENST00000409558 NFAT5O94916 1531 aa15.89■□□□□ 0.13
VPS54-203ENST00000409558 RPS6KB1P23443 525 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 PLBD2Q8NHP8 589 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 PAG1Q9NWQ8 432 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 TTC39AQ5SRH9 613 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 DACT1Q9NYF0 836 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 TCHHQ07283 1943 aa15.88■□□□□ 0.13
VPS54-203ENST00000409558 IDH1O75874 414 aaKnown RBP15.87■□□□□ 0.13
VPS54-203ENST00000409558 KRT85P78386 507 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 TOB2Q14106 344 aaPredicted RBP15.87■□□□□ 0.13
VPS54-203ENST00000409558 CCDC183Q5T5S1 534 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 KCNQ4P56696 695 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 BTG4Q9NY30 223 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 HIP1O00291 1037 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 PHF14O94880 888 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 UBE2HP62256 183 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 MCMDC2Q4G0Z9 681 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 CCDC82Q8N4S0 544 aa15.87■□□□□ 0.13
VPS54-203ENST00000409558 SMIM5Q71RC9 77 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 LUZP1Q86V48 1076 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 CNNM1Q9NRU3 951 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 IL2RBP14784 551 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 NUTM2BA6NNL0 878 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 NUTM2EB1AL46 878 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 POLR3DP05423 398 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 RFX5P48382 616 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 SCARF1Q14162 830 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 NUTM2AQ8IVF1 878 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 ZSCAN31Q96LW9 406 aaPredicted RBP15.86■□□□□ 0.13
VPS54-203ENST00000409558 PPP1R9BQ96SB3 815 aa15.86■□□□□ 0.13
VPS54-203ENST00000409558 STOX1Q6ZVD7 989 aa15.85■□□□□ 0.13
VPS54-203ENST00000409558 COPRSQ9NQ92 184 aa15.85■□□□□ 0.13
VPS54-203ENST00000409558 SH2B1Q9NRF2 756 aaPredicted RBP15.85■□□□□ 0.13
VPS54-203ENST00000409558 FAM208AQ9UK61 1670 aaKnown RBP15.85■□□□□ 0.13
VPS54-203ENST00000409558 METTL24Q5JXM2 366 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms