RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 PPP1R1BQ9UD71 204 aaPredicted RBP25.61■■□□□ 1.69
VSX1-203ENST00000409285 CACNA1SQ13698 1873 aa25.61■■□□□ 1.69
VSX1-203ENST00000409285 KLRG2A4D1S0 409 aaPredicted RBP25.6■■□□□ 1.69
VSX1-203ENST00000409285 HCLS1P14317 486 aaPredicted RBP25.6■■□□□ 1.69
VSX1-203ENST00000409285 CEP85Q6P2H3 762 aa25.6■■□□□ 1.69
VSX1-203ENST00000409285 BRIP1Q9BX63 1249 aa25.6■■□□□ 1.69
VSX1-203ENST00000409285 SF3B3Q15393 1217 aaKnown RBP25.6■■□□□ 1.69
VSX1-203ENST00000409285 TTLL11Q8NHH1 800 aa25.6■■□□□ 1.69
VSX1-203ENST00000409285 A0A1B0GUL6 1792 aa25.59■■□□□ 1.69
VSX1-203ENST00000409285 CRY2Q49AN0 593 aa25.59■■□□□ 1.69
VSX1-203ENST00000409285 NLRP3Q96P20 1036 aa25.59■■□□□ 1.69
VSX1-203ENST00000409285 PCDHB15Q9Y5E8 787 aa25.59■■□□□ 1.69
VSX1-203ENST00000409285 ATP8B2P98198 1209 aa25.57■■□□□ 1.68
VSX1-203ENST00000409285 LMBR1LQ6UX01 489 aa25.57■■□□□ 1.68
VSX1-203ENST00000409285 CCDC152Q4G0S7 254 aa25.56■■□□□ 1.68
VSX1-203ENST00000409285 PDZRN3Q9UPQ7 1066 aa25.56■■□□□ 1.68
VSX1-203ENST00000409285 PDE6BP35913 854 aa25.55■■□□□ 1.68
VSX1-203ENST00000409285 C3orf67Q6ZVT6 689 aa25.55■■□□□ 1.68
VSX1-203ENST00000409285 SIRT2Q8IXJ6 389 aa25.55■■□□□ 1.68
VSX1-203ENST00000409285 CCDC24Q8N4L8 307 aa25.55■■□□□ 1.68
VSX1-203ENST00000409285 SSH3Q8TE77 659 aa25.55■■□□□ 1.68
VSX1-203ENST00000409285 POLA2Q14181 598 aa25.54■■□□□ 1.68
VSX1-203ENST00000409285 LRRC37AA6NMS7 1700 aa25.54■■□□□ 1.68
VSX1-203ENST00000409285 SRGAP3O43295 1099 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 COL4A1P02462 1669 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 PNMA6EA0A0J9YXQ4 647 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 HMMRO75330 724 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 HDAC1Q13547 482 aaPredicted RBP25.53■■□□□ 1.68
VSX1-203ENST00000409285 FAM161AQ3B820 660 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 GREM2Q9H772 168 aa25.53■■□□□ 1.68
VSX1-203ENST00000409285 HOXA10P31260 410 aaPredicted RBP25.51■■□□□ 1.67
VSX1-203ENST00000409285 RFX5P48382 616 aaPredicted RBP25.51■■□□□ 1.67
VSX1-203ENST00000409285 IFIT5Q13325 482 aaKnown RBP25.5■■□□□ 1.67
VSX1-203ENST00000409285 GOLGB1Q14789 3259 aaKnown RBP25.5■■□□□ 1.67
VSX1-203ENST00000409285 SRGNP10124 158 aa25.49■■□□□ 1.67
VSX1-203ENST00000409285 ITGA6P23229 1130 aa25.49■■□□□ 1.67
VSX1-203ENST00000409285 CCDC57Q2TAC2 916 aa25.49■■□□□ 1.67
VSX1-203ENST00000409285 COPRSQ9NQ92 184 aa25.49■■□□□ 1.67
VSX1-203ENST00000409285 CD2APQ9Y5K6 639 aa25.49■■□□□ 1.67
VSX1-203ENST00000409285 PPP4R2Q9NY27 417 aa25.48■■□□□ 1.67
VSX1-203ENST00000409285 CHMP3Q9Y3E7 222 aa25.48■■□□□ 1.67
VSX1-203ENST00000409285 ANKRD18BA2A2Z9 1011 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 RPGRQ92834 1020 aaKnown RBP25.47■■□□□ 1.67
VSX1-203ENST00000409285 GTF3C3Q9Y5Q9 886 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 SLX4Q8IY92 1834 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 ARFGEF1Q9Y6D6 1849 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 NPR1P16066 1061 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 PTPN12Q05209 780 aaKnown RBP25.47■■□□□ 1.67
VSX1-203ENST00000409285 DDX46Q7L014 1031 aaKnown RBP25.47■■□□□ 1.67
VSX1-203ENST00000409285 CRAMP1Q96RY5 1269 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 CDC5LQ99459 802 aaKnown RBP25.47■■□□□ 1.67
VSX1-203ENST00000409285 RWDD1Q9H446 243 aaPredicted RBP25.47■■□□□ 1.67
VSX1-203ENST00000409285 FBXO3Q9UK99 471 aa25.47■■□□□ 1.67
VSX1-203ENST00000409285 TGFB2P61812 414 aa25.46■■□□□ 1.67
VSX1-203ENST00000409285 MASTLQ96GX5 879 aa25.46■■□□□ 1.67
VSX1-203ENST00000409285 CCDC85AQ96PX6 553 aaPredicted RBP25.46■■□□□ 1.67
VSX1-203ENST00000409285 FHDC1Q9C0D6 1143 aaPredicted RBP25.46■■□□□ 1.67
VSX1-203ENST00000409285 NOP58Q9Y2X3 529 aaKnown RBP25.46■■□□□ 1.67
VSX1-203ENST00000409285 H0YIN7 160 aa25.45■■□□□ 1.66
VSX1-203ENST00000409285 STYK1Q6J9G0 422 aa25.45■■□□□ 1.66
VSX1-203ENST00000409285 RBM17Q96I25 401 aaKnown RBP25.45■■□□□ 1.66
VSX1-203ENST00000409285 SEC31BQ9NQW1 1179 aa25.45■■□□□ 1.66
VSX1-203ENST00000409285 LTBP1Q14766 1721 aa25.45■■□□□ 1.66
VSX1-203ENST00000409285 C2CD5Q86YS7 1000 aa25.44■■□□□ 1.66
VSX1-203ENST00000409285 KLHL34Q8N239 644 aa25.44■■□□□ 1.66
VSX1-203ENST00000409285 GRAPQ13588 217 aa25.43■■□□□ 1.66
VSX1-203ENST00000409285 GRAPLQ8TC17 118 aaPredicted RBP25.43■■□□□ 1.66
VSX1-203ENST00000409285 DCTPP1Q9H773 170 aa25.43■■□□□ 1.66
VSX1-203ENST00000409285 CIAO1O76071 339 aa25.42■■□□□ 1.66
VSX1-203ENST00000409285 SYT17Q9BSW7 474 aa25.42■■□□□ 1.66
VSX1-203ENST00000409285 ARAP2Q8WZ64 1704 aa25.42■■□□□ 1.66
VSX1-203ENST00000409285 ALDH1B1P30837 517 aa25.41■■□□□ 1.66
VSX1-203ENST00000409285 CCDC136Q96JN2 1154 aa25.41■■□□□ 1.66
VSX1-203ENST00000409285 IGHDP01880 384 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 IGHMBP2P38935 993 aaKnown RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 HSP90AB4PQ58FF6 505 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 TAF7LQ5H9L4 462 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 TMC4Q7Z404 712 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 ANKRD18AQ8IVF6 992 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 KLHDC4Q8TBB5 520 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 CELF1Q92879 486 aaKnown RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 GCC1Q96CN9 775 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 KDM2BQ8NHM5 1336 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 RPS8P62241 208 aaKnown RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 SMC5Q8IY18 1101 aa25.4■■□□□ 1.66
VSX1-203ENST00000409285 ZNF594Q96JF6 807 aaPredicted RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 BSDC1Q9NW68 430 aaPredicted RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 PA2G4Q9UQ80 394 aaKnown RBP25.4■■□□□ 1.66
VSX1-203ENST00000409285 EYA2O00167 538 aa25.39■■□□□ 1.65
VSX1-203ENST00000409285 BBOX1O75936 387 aa25.39■■□□□ 1.65
VSX1-203ENST00000409285 KCNA3P22001 575 aa25.39■■□□□ 1.65
VSX1-203ENST00000409285 CHRNA5P30532 468 aa25.39■■□□□ 1.65
VSX1-203ENST00000409285 CNKSR1Q969H4 720 aa25.39■■□□□ 1.65
VSX1-203ENST00000409285 SURF6O75683 361 aaKnown RBP25.38■■□□□ 1.65
VSX1-203ENST00000409285 LDHAL6AQ6ZMR3 332 aa25.38■■□□□ 1.65
VSX1-203ENST00000409285 MPHOSPH8Q99549 860 aa25.38■■□□□ 1.65
VSX1-203ENST00000409285 DPEP1P16444 411 aa25.37■■□□□ 1.65
VSX1-203ENST00000409285 ATG9AQ7Z3C6 839 aa25.37■■□□□ 1.65
VSX1-203ENST00000409285 RIPOR2Q9Y4F9 1068 aa25.37■■□□□ 1.65
VSX1-203ENST00000409285 RAB11FIP3O75154 756 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms