RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NUP160Q12769 1436 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 MICALCLQ6ZW33 695 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 SCLT1Q96NL6 688 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 RTL1A6NKG5 1358 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 GOLGA6L7A0A1B0GV03 622 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 NAA25Q14CX7 972 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 LONRF2Q1L5Z9 754 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 C11orf57Q6ZUT1 292 aaPredicted RBP10.71□□□□□ -0.69
COL28A1-201ENST00000399429 ATRIPQ8WXE1 791 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 ORC3Q9UBD5 711 aaPredicted RBP10.71□□□□□ -0.69
COL28A1-201ENST00000399429 ZNF330Q9Y3S2 320 aaPredicted RBP10.71□□□□□ -0.69
COL28A1-201ENST00000399429 CC2D2AQ9P2K1 1620 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 CTAGE9A4FU28 777 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 NEBLO76041 1014 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 MARCKSP29966 332 aaPredicted RBP10.71□□□□□ -0.69
COL28A1-201ENST00000399429 FANCCQ00597 558 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 RAB11FIP4Q86YS3 637 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 RASEFQ8IZ41 740 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 EXOC4Q96A65 974 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 NEK1Q96PY6 1258 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 MPHOSPH8Q99549 860 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 IMPACTQ9P2X3 320 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 FAN1Q9Y2M0 1017 aa10.71□□□□□ -0.69
COL28A1-201ENST00000399429 SGSM2O43147 1006 aa10.71□□□□□ -0.7
COL28A1-201ENST00000399429 MCM3P25205 808 aa10.71□□□□□ -0.7
COL28A1-201ENST00000399429 BRD2P25440 801 aaKnown RBP10.71□□□□□ -0.7
COL28A1-201ENST00000399429 RBM6P78332 1123 aaKnown RBP10.71□□□□□ -0.7
COL28A1-201ENST00000399429 NEXNQ0ZGT2 675 aa10.71□□□□□ -0.7
COL28A1-201ENST00000399429 PTPN21Q16825 1174 aa10.71□□□□□ -0.7
COL28A1-201ENST00000399429 RPAINQ86UA6 219 aa10.71□□□□□ -0.7
COL28A1-201ENST00000399429 FAM135AQ9P2D6 1515 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 WDR7Q9Y4E6 1490 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 EIF3CLB5ME19 914 aaKnown RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 ATP8B2P98198 1209 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 PPARDQ03181 441 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 FAM160A1Q05DH4 1040 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 SLFNL1Q499Z3 407 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 CREB3L3Q68CJ9 461 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 UNC5CLQ8IV45 518 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 FAM76AQ8TAV0 307 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 EIF3CQ99613 913 aaKnown RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 NCAPGQ9BPX3 1015 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 RGS12O14924 1447 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 MAGEA9P43362 315 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 SARNPP82979 210 aaKnown RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 PPP2R5AQ15172 486 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 SRLQ86TD4 932 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 RGS22Q8NE09 1264 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 NGDNQ8NEJ9 315 aaKnown RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 NUP88Q99567 741 aaPredicted RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 JAK2O60674 1132 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 MYCNP04198 464 aaPredicted RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 SYKP43405 635 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 DNA2P51530 1060 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 TAF7Q15545 349 aaPredicted RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 EVI5LQ96CN4 794 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 CAPZA3Q96KX2 299 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 PARD6BQ9BYG5 372 aa10.7□□□□□ -0.7
COL28A1-201ENST00000399429 ZNHIT6Q9NWK9 470 aaKnown RBP10.7□□□□□ -0.7
COL28A1-201ENST00000399429 PNMA6EA0A0J9YXQ4 647 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 NDUFAB1O14561 156 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 CCDC172P0C7W6 258 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 EZRP15311 586 aaKnown RBP10.69□□□□□ -0.7
COL28A1-201ENST00000399429 GOLGA8FQ08AF8 430 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 GOLGA8DPQ0D2H9 430 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 Q6ZUG5 572 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 DESI2Q9BSY9 194 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 ABCC4O15439 1325 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 AP5Z1O43299 807 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 LRCH2Q5VUJ6 765 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 G2E3Q7L622 706 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 DNMT1P26358 1616 aaKnown RBP10.69□□□□□ -0.7
COL28A1-201ENST00000399429 EIF5P55010 431 aaKnown RBP10.69□□□□□ -0.7
COL28A1-201ENST00000399429 MLECQ14165 292 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 IQCEQ6IPM2 695 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 NME9Q86XW9 330 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 TMEM87AQ8NBN3 555 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 JADE2Q9NQC1 790 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 CAPN7Q9Y6W3 813 aa10.69□□□□□ -0.7
COL28A1-201ENST00000399429 LARGE1O95461 756 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 CCT5P48643 541 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 FKBP15Q5T1M5 1219 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 BICC1Q9H694 974 aaKnown RBP10.68□□□□□ -0.7
COL28A1-201ENST00000399429 BCCIPQ9P287 314 aaKnown RBP eCLIP10.68□□□□□ -0.7
COL28A1-201ENST00000399429 PIP4K2BP78356 416 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 ZNF622Q969S3 477 aaKnown RBP eCLIP10.68□□□□□ -0.7
COL28A1-201ENST00000399429 JPH2Q9BR39 696 aaPredicted RBP10.68□□□□□ -0.7
COL28A1-201ENST00000399429 FAM204AQ9H8W3 233 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 CUL7Q14999 1698 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 PSDA5PKW4 1024 aaPredicted RBP10.68□□□□□ -0.7
COL28A1-201ENST00000399429 CCDC114Q96M63 670 aa10.68□□□□□ -0.7
COL28A1-201ENST00000399429 ARHGAP6O43182 974 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 ATP8B1O43520 1251 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 BRD3Q15059 726 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 RIC3Q7Z5B4 369 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 IQGAP2Q13576 1575 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 RTEL1-TNFRSF6BF6WH68 1400 aa10.67□□□□□ -0.7
COL28A1-201ENST00000399429 CLNS1AP54105 237 aaKnown RBP10.67□□□□□ -0.7
COL28A1-201ENST00000399429 ADKP55263 362 aaKnown RBP10.67□□□□□ -0.7
COL28A1-201ENST00000399429 MTX1Q13505 466 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms