RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 BRPF3Q9ULD4 1205 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 SBNO2Q9Y2G9 1366 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 SLC9C2Q5TAH2 1124 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 FSIP1Q8NA03 581 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 C19orf44Q9H6X5 657 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 PA2G4Q9UQ80 394 aaKnown RBP13.08□□□□□ -0.32
TTC28-201ENST00000397906 FGFR1OPO95684 399 aaKnown RBP13.08□□□□□ -0.32
TTC28-201ENST00000397906 TRAPPC3LQ5T215 181 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 KIF20AO95235 890 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 AMPD3Q01432 767 aa13.08□□□□□ -0.32
TTC28-201ENST00000397906 DDX17Q92841 729 aaKnown RBP13.08□□□□□ -0.32
TTC28-201ENST00000397906 GSTTP1A0A1W2PQM5 241 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 SMARCC2Q8TAQ2 1214 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 A2MP01023 1474 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 EIF4G3O43432 1585 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 MAGEB6P1A0A0J9YX57 407 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 FAM98CQ17RN3 349 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 FAM212AQ96EL1 285 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 ANO10Q9NW15 660 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 BICRAQ9NZM4 1560 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 TBCAO75347 108 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 CWC15Q9P013 229 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 EIF4A2Q14240 407 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 IRS4O14654 1257 aaPredicted RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 UBA7P41226 1012 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 ORC3Q9UBD5 711 aaPredicted RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 GRM8O00222 908 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 PRPF4BQ13523 1007 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 ZNF518AQ6AHZ1 1483 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 TOP1P11387 765 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 PRKG1Q13976 671 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 CETN1Q12798 172 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 CWF19L2Q2TBE0 894 aaKnown RBP13.07□□□□□ -0.32
TTC28-201ENST00000397906 CCDC174Q6PII3 467 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 MAGEB6Q8N7X4 407 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 TCEANC2Q96MN5 208 aa13.07□□□□□ -0.32
TTC28-201ENST00000397906 TBC1D9Q6ZT07 1266 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 SCAND2PQ9GZW5 306 aaPredicted RBP13.06□□□□□ -0.32
TTC28-201ENST00000397906 SAP30BPQ9UHR5 308 aaKnown RBP13.06□□□□□ -0.32
TTC28-201ENST00000397906 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
TTC28-201ENST00000397906 KLF18A0A0U1RQI7 1052 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 MCM5P33992 734 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 AKNAD1Q5T1N1 836 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 PCDH11XQ9BZA7 1347 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 PCDH11YQ9BZA8 1340 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 PODXL2Q9NZ53 605 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 MTHFSDQ2M296 383 aaKnown RBP13.06□□□□□ -0.32
TTC28-201ENST00000397906 SYNCQ9H7C4 482 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 MCM9Q9NXL9 1143 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 ABCC1P33527 1531 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 TMCO5BA8MYB1 307 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 RAB3GAP1Q15042 981 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 EXOC1Q9NV70 894 aa13.06□□□□□ -0.32
TTC28-201ENST00000397906 DYDC1Q8WWB3 177 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 NPATQ14207 1427 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 NAPAP54920 295 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 CCDC24Q8N4L8 307 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 RHPN1Q8TCX5 695 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 PKD2L1Q9P0L9 805 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 DUOX2Q9NRD8 1548 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 SFPQP23246 707 aaKnown RBP eCLIP13.05□□□□□ -0.324e-6■■■□□ 17.7
TTC28-201ENST00000397906 CHST3Q7LGC8 479 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 LUZP1Q86V48 1076 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 RBM17Q96I25 401 aaKnown RBP13.05□□□□□ -0.32
TTC28-201ENST00000397906 CLIP2Q9UDT6 1046 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 CASQ1P31415 396 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 AFMP43652 599 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 KRT23Q9C075 422 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 PHACTR2O75167 634 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 GCP02774 474 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 STXBP4Q6ZWJ1 553 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 CNBD1Q8NA66 436 aa13.05□□□□□ -0.32
TTC28-201ENST00000397906 KIAA0754O94854 1291 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 STK32BQ9NY57 414 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 ESR2Q92731 530 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 NECAB1Q8N987 351 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 RGS22Q8NE09 1264 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 PAG1Q9NWQ8 432 aa13.04□□□□□ -0.32
TTC28-201ENST00000397906 HSP90AA4PQ58FG1 418 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 KIF5CO60282 957 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 KCNA6P17658 529 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 LDHBP07195 334 aaKnown RBP13.03□□□□□ -0.32
TTC28-201ENST00000397906 SSFA2P28290 1259 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 STAT6P42226 847 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 BRF1Q92994 677 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 SPDYE3A6NKU9 549 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 TTC22Q5TAA0 569 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 C8orf58Q8NAV2 365 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 EIF6P56537 245 aaKnown RBP13.03□□□□□ -0.32
TTC28-201ENST00000397906 TCHPQ9BT92 498 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 ZBTB43O43298 467 aa13.03□□□□□ -0.32
TTC28-201ENST00000397906 BCCIPQ9P287 314 aaKnown RBP eCLIP13.02□□□□□ -0.323e-9■■■■■ 29.6
TTC28-201ENST00000397906 UFL1O94874 794 aa13.02□□□□□ -0.32
TTC28-201ENST00000397906 NOP2P46087 812 aaKnown RBP13.02□□□□□ -0.32
TTC28-201ENST00000397906 ERMNQ8TAM6 284 aa13.02□□□□□ -0.32
TTC28-201ENST00000397906 MSL1Q68DK7 614 aa13.02□□□□□ -0.32
TTC28-201ENST00000397906 TRIM47Q96LD4 638 aa13.02□□□□□ -0.32
TTC28-201ENST00000397906 EIF3JO75822 258 aaKnown RBP13.02□□□□□ -0.33
TTC28-201ENST00000397906 RTN1Q16799 776 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms