RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 CHMP3Q9Y3E7 222 aa29.52■■■□□ 2.32
TSPAN4-203ENST00000397397 CSF1RP07333 972 aa29.51■■■□□ 2.31
TSPAN4-203ENST00000397397 RABL6Q3YEC7 729 aaPredicted RBP29.51■■■□□ 2.31
TSPAN4-203ENST00000397397 KIF13BQ9NQT8 1826 aa29.5■■■□□ 2.31
TSPAN4-203ENST00000397397 SF3B3Q15393 1217 aaKnown RBP29.5■■■□□ 2.31
TSPAN4-203ENST00000397397 CCDC152Q4G0S7 254 aa29.5■■■□□ 2.31
TSPAN4-203ENST00000397397 NLGN2Q8NFZ4 835 aa29.49■■■□□ 2.31
TSPAN4-203ENST00000397397 KLRG2A4D1S0 409 aaPredicted RBP29.48■■■□□ 2.31
TSPAN4-203ENST00000397397 CEP85Q6P2H3 762 aa29.48■■■□□ 2.31
TSPAN4-203ENST00000397397 C2CD5Q86YS7 1000 aa29.47■■■□□ 2.31
TSPAN4-203ENST00000397397 ATP8B2P98198 1209 aa29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 FAM161AQ3B820 660 aa29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 CRY2Q49AN0 593 aa29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 RPGRQ92834 1020 aaKnown RBP29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 GREM2Q9H772 168 aa29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 COL11A2P13942 1736 aaPredicted RBP29.46■■■□□ 2.31
TSPAN4-203ENST00000397397 MTX1Q13505 466 aa29.45■■■□□ 2.31
TSPAN4-203ENST00000397397 RPAP2Q8IXW5 612 aaPredicted RBP29.45■■■□□ 2.31
TSPAN4-203ENST00000397397 PDZRN3Q9UPQ7 1066 aa29.45■■■□□ 2.31
TSPAN4-203ENST00000397397 PCDHB15Q9Y5E8 787 aa29.45■■■□□ 2.31
TSPAN4-203ENST00000397397 CD2APQ9Y5K6 639 aa29.45■■■□□ 2.31
TSPAN4-203ENST00000397397 H0YIN7 160 aa29.45■■■□□ 2.3
TSPAN4-203ENST00000397397 SRGAP3O43295 1099 aa29.45■■■□□ 2.3
TSPAN4-203ENST00000397397 CCDC57Q2TAC2 916 aa29.44■■■□□ 2.3
TSPAN4-203ENST00000397397 DDX46Q7L014 1031 aaKnown RBP29.44■■■□□ 2.3
TSPAN4-203ENST00000397397 RTL9Q8NET4 1388 aa29.44■■■□□ 2.3
TSPAN4-203ENST00000397397 PNMA6EA0A0J9YXQ4 647 aa29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 SRGNP10124 158 aa29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 ITGA6P23229 1130 aa29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 CHRNA5P30532 468 aa29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 IFIT5Q13325 482 aaKnown RBP29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 RBM17Q96I25 401 aaKnown RBP29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 SEC31BQ9NQW1 1179 aa29.43■■■□□ 2.3
TSPAN4-203ENST00000397397 ANKRD18BA2A2Z9 1011 aa29.42■■■□□ 2.3
TSPAN4-203ENST00000397397 NPR1P16066 1061 aa29.42■■■□□ 2.3
TSPAN4-203ENST00000397397 TGFB2P61812 414 aa29.42■■■□□ 2.3
TSPAN4-203ENST00000397397 SIRT2Q8IXJ6 389 aa29.41■■■□□ 2.3
TSPAN4-203ENST00000397397 MASTLQ96GX5 879 aa29.41■■■□□ 2.3
TSPAN4-203ENST00000397397 TAF1P21675 1872 aa29.41■■■□□ 2.3
TSPAN4-203ENST00000397397 HOXA10P31260 410 aaPredicted RBP29.4■■■□□ 2.3
TSPAN4-203ENST00000397397 ZNF622Q969S3 477 aaKnown RBP eCLIP29.4■■■□□ 2.3
TSPAN4-203ENST00000397397 KIAA1551Q9HCM1 1747 aa29.4■■■□□ 2.3
TSPAN4-203ENST00000397397 A0A0G2JLW4 131 aa29.39■■■□□ 2.3
TSPAN4-203ENST00000397397 DPEP1P16444 411 aa29.39■■■□□ 2.3
TSPAN4-203ENST00000397397 TAF7LQ5H9L4 462 aa29.39■■■□□ 2.3
TSPAN4-203ENST00000397397 SSH3Q8TE77 659 aa29.39■■■□□ 2.3
TSPAN4-203ENST00000397397 DLEC1Q9Y238 1755 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 DCAF8L1A6NGE4 600 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 HMMRO75330 724 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 RFX5P48382 616 aaPredicted RBP29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 POLA2Q14181 598 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 ERICH6BQ5W0A0 696 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 STYK1Q6J9G0 422 aa29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 CDC5LQ99459 802 aaKnown RBP29.38■■■□□ 2.29
TSPAN4-203ENST00000397397 ZNF594Q96JF6 807 aaPredicted RBP29.37■■■□□ 2.29
TSPAN4-203ENST00000397397 CRAMP1Q96RY5 1269 aa29.37■■■□□ 2.29
TSPAN4-203ENST00000397397 GRAPQ13588 217 aa29.37■■■□□ 2.29
TSPAN4-203ENST00000397397 KLHDC4Q8TBB5 520 aa29.37■■■□□ 2.29
TSPAN4-203ENST00000397397 GRAPLQ8TC17 118 aaPredicted RBP29.37■■■□□ 2.29
TSPAN4-203ENST00000397397 ALDH1B1P30837 517 aa29.36■■■□□ 2.29
TSPAN4-203ENST00000397397 ANKRD18AQ8IVF6 992 aa29.36■■■□□ 2.29
TSPAN4-203ENST00000397397 CELF1Q92879 486 aaKnown RBP29.36■■■□□ 2.29
TSPAN4-203ENST00000397397 SPEF2Q9C093 1822 aa29.35■■■□□ 2.29
TSPAN4-203ENST00000397397 IGHMBP2P38935 993 aaKnown RBP29.35■■■□□ 2.29
TSPAN4-203ENST00000397397 PA2G4Q9UQ80 394 aaKnown RBP29.35■■■□□ 2.29
TSPAN4-203ENST00000397397 COL4A1P02462 1669 aa29.35■■■□□ 2.29
TSPAN4-203ENST00000397397 CACNA1SQ13698 1873 aa29.34■■■□□ 2.29
TSPAN4-203ENST00000397397 RPS8P62241 208 aaKnown RBP29.34■■■□□ 2.29
TSPAN4-203ENST00000397397 PTPN12Q05209 780 aaKnown RBP29.34■■■□□ 2.29
TSPAN4-203ENST00000397397 CNKSR1Q969H4 720 aa29.34■■■□□ 2.29
TSPAN4-203ENST00000397397 KCNA3P22001 575 aa29.33■■■□□ 2.29
TSPAN4-203ENST00000397397 COPRSQ9NQ92 184 aa29.33■■■□□ 2.29
TSPAN4-203ENST00000397397 PELP1Q8IZL8 1130 aaKnown RBP29.32■■■□□ 2.28
TSPAN4-203ENST00000397397 MPHOSPH8Q99549 860 aa29.32■■■□□ 2.28
TSPAN4-203ENST00000397397 HDAC1Q13547 482 aaPredicted RBP29.31■■■□□ 2.28
TSPAN4-203ENST00000397397 GPR162Q16538 588 aa29.31■■■□□ 2.28
TSPAN4-203ENST00000397397 SIL1Q9H173 461 aa29.31■■■□□ 2.28
TSPAN4-203ENST00000397397 RWDD1Q9H446 243 aaPredicted RBP29.31■■■□□ 2.28
TSPAN4-203ENST00000397397 BBOX1O75936 387 aa29.3■■■□□ 2.28
TSPAN4-203ENST00000397397 LDHAL6AQ6ZMR3 332 aa29.3■■■□□ 2.28
TSPAN4-203ENST00000397397 PIM2Q9P1W9 311 aa29.3■■■□□ 2.28
TSPAN4-203ENST00000397397 SURF6O75683 361 aaKnown RBP29.29■■■□□ 2.28
TSPAN4-203ENST00000397397 TTLL6Q8N841 843 aa29.29■■■□□ 2.28
TSPAN4-203ENST00000397397 CNNM1Q9NRU3 951 aa29.29■■■□□ 2.28
TSPAN4-203ENST00000397397 PPEF1O14829 653 aaPredicted RBP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 PRPF40BQ6NWY9 871 aaKnown RBP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 PUS3Q9BZE2 481 aaKnown RBP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 SLX4Q8IY92 1834 aa29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 BRCA1P38398 1863 aaKnown RBP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 YBX3P16989 372 aaKnown RBP eCLIP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 BSDC1Q9NW68 430 aaPredicted RBP29.28■■■□□ 2.28
TSPAN4-203ENST00000397397 EYA2O00167 538 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 IGHDP01880 384 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 G3BP1Q13283 466 aaKnown RBP eCLIP29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 LRRC24Q50LG9 513 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 PPP4R2Q9NY27 417 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 WWC3Q9ULE0 1092 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 EXOC6BQ9Y2D4 811 aa29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 NOP58Q9Y2X3 529 aaKnown RBP29.27■■■□□ 2.28
TSPAN4-203ENST00000397397 OS9Q13438 667 aaPredicted RBP29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms