RNA–Protein interactions for RNA: ENST00000395358.7

RAPGEF3-202, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2 BASIC

Gene RAPGEF3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-202ENST00000395358 SMC2O95347 1197 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 HDGFL1Q5TGJ6 251 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 ZNF428Q96B54 188 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 USP21Q9UK80 565 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 WDR33Q9C0J8 1336 aaKnown RBP13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 MCTP2Q6DN12 878 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 FBXO38Q6PIJ6 1188 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 ADGRB2O60241 1585 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 ITSN1Q15811 1721 aa13.25□□□□□ -0.29
RAPGEF3-202ENST00000395358 DDX58O95786 925 aaKnown RBP13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 SYCP1Q15431 976 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 CCDC171Q6TFL3 1326 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 IGSF1Q8N6C5 1336 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 BICD2Q8TD16 824 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 CHD2O14647 1828 aaKnown RBP13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 MMP14P50281 582 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 PKP1Q13835 747 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 LARP1Q6PKG0 1096 aaKnown RBP13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 GOLGA5Q8TBA6 731 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 VPS18Q9P253 973 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 XRN1Q8IZH2 1706 aaKnown RBP13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 PSEN1P49768 467 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 KMT5BQ4FZB7 885 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 TBC1D9Q6ZT07 1266 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 NOC3LQ8WTT2 800 aaKnown RBP13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 WDR17Q8IZU2 1322 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 CAMK4Q16566 473 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 ARFGAP3Q9NP61 516 aa13.24□□□□□ -0.29
RAPGEF3-202ENST00000395358 MAP3K5Q99683 1374 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 ANKRD65E5RJM6 399 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 TULP2O00295 520 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 SNW1Q13573 536 aaKnown RBP13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 ERCC6LQ2NKX8 1250 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 CEP120Q8N960 986 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 BLMP54132 1417 aaPredicted RBP13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 JCADQ9P266 1359 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 MCM6Q14566 821 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 CARD10Q9BWT7 1032 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 PDRG1Q9NUG6 133 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 RAI14Q9P0K7 980 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 PCDH11XQ9BZA7 1347 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 PCDH11YQ9BZA8 1340 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 SRRTQ9BXP5 876 aaKnown RBP13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 SLC24A3Q9HC58 644 aa13.23□□□□□ -0.29
RAPGEF3-202ENST00000395358 CLSTN1O94985 981 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 LRMPQ12912 555 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 AP1ARQ63HQ0 302 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 NEXNQ0ZGT2 675 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 DNAJC21Q5F1R6 531 aaKnown RBP13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 FAM43BQ6ZT52 329 aaPredicted RBP13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 DCAF5Q96JK2 942 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 TNMDQ9H2S6 317 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 SPTLC3Q9NUV7 552 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 SMC3Q9UQE7 1217 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 SKILP12757 684 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 ATP2B1P20020 1258 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 USP48Q86UV5 1035 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 DONSONQ9NYP3 566 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 AXIN2Q9Y2T1 843 aa13.22□□□□□ -0.29
RAPGEF3-202ENST00000395358 DHX8Q14562 1220 aaKnown RBP13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 PTCD1O75127 700 aaKnown RBP13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 CD2BP2O95400 341 aaKnown RBP13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 MAGEA9P43362 315 aa13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 PIK3R5Q8WYR1 880 aa13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 PNPLA6Q8IY17 1366 aa13.21□□□□□ -0.29
RAPGEF3-202ENST00000395358 SLC4A2P04920 1241 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 MX1P20591 662 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 MAP3K11Q16584 847 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 NUP62CLQ9H1M0 184 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 MBIPQ9NS73 344 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 TNNQ9UQP3 1299 aa13.21□□□□□ -0.3
RAPGEF3-202ENST00000395358 ANO2Q9NQ90 1003 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 KAT6BQ8WYB5 2073 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 RARSP54136 660 aaKnown RBP13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 CCDC196A0A1B0GTZ2 297 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 ERLIN1O75477 346 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 HSPA1LP34931 641 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 MCM2P49736 904 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 SMC1AQ14683 1233 aaKnown RBP13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 CKAP2LQ8IYA6 745 aa13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.2□□□□□ -0.3
RAPGEF3-202ENST00000395358 CTIFO43310 598 aaKnown RBP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 PHACTR2O75167 634 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 AIMP1Q12904 312 aaKnown RBP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 PLEKHF1Q96S99 279 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 MMS22LQ6ZRQ5 1243 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 SRLQ86TD4 932 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 FMNL2Q96PY5 1086 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 RNMTO43148 476 aaKnown RBP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 FAM98CQ17RN3 349 aaKnown RBP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 FMNL3Q8IVF7 1028 aa13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.19□□□□□ -0.3
RAPGEF3-202ENST00000395358 CEP57Q86XR8 500 aa13.18□□□□□ -0.3
RAPGEF3-202ENST00000395358 TRIM35Q9UPQ4 493 aa13.18□□□□□ -0.3
RAPGEF3-202ENST00000395358 ERLIN2O94905 339 aa13.18□□□□□ -0.3
RAPGEF3-202ENST00000395358 BMP2KLQ5H9B9 411 aa13.18□□□□□ -0.3
RAPGEF3-202ENST00000395358 EGFL6Q8IUX8 553 aa13.18□□□□□ -0.3
RAPGEF3-202ENST00000395358 SMARCE1Q969G3 411 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms