RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 HSP90AB3PQ58FF7 597 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 CREB3L3Q68CJ9 461 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 LDHAL6AQ6ZMR3 332 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 CNNM1Q9NRU3 951 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 CYP46A1Q9Y6A2 500 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 USP42Q9H9J4 1324 aaKnown RBP13.37□□□□□ -0.27
TCOF1-203ENST00000394269 IFIT1P09914 478 aaKnown RBP13.36□□□□□ -0.27
TCOF1-203ENST00000394269 IL15P40933 162 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-203ENST00000394269 ANO8Q9HCE9 1232 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-203ENST00000394269 SCN11AQ9UI33 1791 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 CYP19A1P11511 503 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-203ENST00000394269 HCLS1P14317 486 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-203ENST00000394269 TAOK2Q9UL54 1235 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 ZDHHC9Q9Y397 364 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 C5P01031 1676 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 HIP1O00291 1037 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 ATP5JP18859 108 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 ADORA1P30542 326 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 HSPA1LP34931 641 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 AK9Q5TCS8 1911 aa13.36□□□□□ -0.27
TCOF1-203ENST00000394269 METTL24Q5JXM2 366 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 CAVIN1Q6NZI2 390 aaKnown RBP13.35□□□□□ -0.27
TCOF1-203ENST00000394269 LRRC2Q9BYS8 371 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 IRS4O14654 1257 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-203ENST00000394269 PPFIA3O75145 1194 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 WASHC4Q2M389 1173 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 GIGYF2Q6Y7W6 1299 aaKnown RBP13.35□□□□□ -0.27
TCOF1-203ENST00000394269 RUFY3Q7L099 469 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 GREM2Q9H772 168 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 LIMCH1Q9UPQ0 1083 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 LARGE1O95461 756 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 PI16Q6UXB8 463 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 BICDL1Q6ZP65 573 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 ISCA1Q9BUE6 129 aa13.35□□□□□ -0.27
TCOF1-203ENST00000394269 MAP3K15Q6ZN16 1313 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 ITGA6P23229 1130 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 TTC39AQ5SRH9 613 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 MARCH10Q8NA82 808 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-203ENST00000394269 PAG1Q9NWQ8 432 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 SMC3Q9UQE7 1217 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 SNAP23O00161 211 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 SLC27A2O14975 620 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 RNF20Q5VTR2 975 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 NLRP10Q86W26 655 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 PANK2Q9BZ23 570 aa13.34□□□□□ -0.27
TCOF1-203ENST00000394269 ZBTB38Q8NAP3 1195 aaPredicted RBP13.33□□□□□ -0.27
TCOF1-203ENST00000394269 CCDC158Q5M9N0 1113 aa13.33□□□□□ -0.28
TCOF1-203ENST00000394269 MAP4K1Q92918 833 aa13.33□□□□□ -0.28
TCOF1-203ENST00000394269 NECTIN1Q15223 517 aa13.33□□□□□ -0.28
TCOF1-203ENST00000394269 BLOC1S2Q6QNY1 142 aa13.33□□□□□ -0.28
TCOF1-203ENST00000394269 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
TCOF1-203ENST00000394269 VPS37CA5D8V6 355 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-203ENST00000394269 VPS53Q5VIR6 699 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 CERKQ8TCT0 537 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 XAGE2Q96GT9 111 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 HAUS7Q99871 368 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 RBM27Q9P2N5 1060 aaKnown RBP13.32□□□□□ -0.28
TCOF1-203ENST00000394269 TAF5LO75529 589 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 HSP90B1P14625 803 aaKnown RBP13.32□□□□□ -0.28
TCOF1-203ENST00000394269 LOC102724428A0A0B4J2F2 783 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 PCCAP05165 728 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-203ENST00000394269 SIK1P57059 783 aa13.32□□□□□ -0.28
TCOF1-203ENST00000394269 MRC1P22897 1456 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 CRKLP46109 303 aaKnown RBP13.31□□□□□ -0.28
TCOF1-203ENST00000394269 SKOR2Q2VWA4 1001 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-203ENST00000394269 MCMDC2Q4G0Z9 681 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 SIPA1L3O60292 1781 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-203ENST00000394269 ANKRD18BA2A2Z9 1011 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 XRCC6P12956 609 aaKnown RBP eCLIP13.31□□□□□ -0.28
TCOF1-203ENST00000394269 FOSBP53539 338 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 CHST3Q7LGC8 479 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 TTLL11Q8NHH1 800 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 WWC3Q9ULE0 1092 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 SPATA31A1Q5TZJ5 1347 aa13.31□□□□□ -0.28
TCOF1-203ENST00000394269 L1TD1Q5T7N2 865 aaKnown RBP13.3□□□□□ -0.28
TCOF1-203ENST00000394269 KBTBD3Q8NAB2 608 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 PSMA5P28066 241 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 GTF2E1P29083 439 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-203ENST00000394269 CUL4AQ13619 759 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 SCARF1Q14162 830 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 ME3Q16798 604 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 FERMT3Q86UX7 667 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 TTC14Q96N46 770 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 HAND2P61296 217 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 GAS2L3Q86XJ1 694 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 CCDC24Q8N4L8 307 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 TPCN1Q9ULQ1 816 aa13.3□□□□□ -0.28
TCOF1-203ENST00000394269 NIP7Q9Y221 180 aaKnown RBP eCLIP13.3□□□□□ -0.28
TCOF1-203ENST00000394269 A0A0G2JLW4 131 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 GJB2P29033 226 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 ATP2B3Q16720 1220 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 PTF1AQ7RTS3 328 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 ZSWIM6Q9HCJ5 1215 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-203ENST00000394269 CYP2E1P05181 493 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-203ENST00000394269 ZAP70P43403 619 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 KCPQ6ZWJ8 1503 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 LMBRD1Q9NUN5 540 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 CCDC87Q9NVE4 849 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 BCL9O00512 1426 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms