RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 HYPKQ9NX55 129 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 ASAP1Q9ULH1 1129 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 L1TD1Q5T7N2 865 aaKnown RBP9.85□□□□□ -0.83
LIMS1-203ENST00000393310 PRPF38BQ5VTL8 546 aaKnown RBP9.85□□□□□ -0.83
LIMS1-203ENST00000393310 STK11IPQ8N1F8 1099 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 UFL1O94874 794 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 KCNQ4P56696 695 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 CCNA1P78396 465 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 BRDTQ58F21 947 aaPredicted RBP9.85□□□□□ -0.83
LIMS1-203ENST00000393310 ZNF428Q96B54 188 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 TMOD4Q9NZQ9 345 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 CLTCL1P53675 1640 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 ECM2O94769 699 aaPredicted RBP9.84□□□□□ -0.83
LIMS1-203ENST00000393310 MYCNP04198 464 aaPredicted RBP9.84□□□□□ -0.83
LIMS1-203ENST00000393310 EMILIN1Q9Y6C2 1016 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 A0A1W2PP64 1363 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 TMEM131LA2VDJ0 1609 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 RGL2O15211 777 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 MTERF4Q7Z6M4 381 aaKnown RBP9.84□□□□□ -0.83
LIMS1-203ENST00000393310 TRIM47Q96LD4 638 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 EYA1Q99502 592 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 COL5A2P05997 1499 aaPredicted RBP9.84□□□□□ -0.83
LIMS1-203ENST00000393310 ANKRD18BA2A2Z9 1011 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 RIMBP2O15034 1052 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 SLC9C1Q4G0N8 1177 aa9.84□□□□□ -0.83
LIMS1-203ENST00000393310 GOLGA6L6A8MZA4 724 aa9.83□□□□□ -0.84
LIMS1-203ENST00000393310 TRPA1O75762 1119 aa9.83□□□□□ -0.84
LIMS1-203ENST00000393310 TRIM17Q9Y577 477 aa9.83□□□□□ -0.84
LIMS1-203ENST00000393310 RGPD1P0DJD0 1748 aa9.83□□□□□ -0.84
LIMS1-203ENST00000393310 GOLGA6L3A6NEY3 463 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 MAP1SQ66K74 1059 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 CRACR2BQ8N4Y2 399 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 ZBTB3Q9H5J0 574 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 TAF1DQ9H5J8 278 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 AS3MTQ9HBK9 375 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 USP42Q9H9J4 1324 aaKnown RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 PRKAR2BP31323 418 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 NFIXQ14938 502 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 TAF1CQ15572 869 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 SLC17A8Q8NDX2 589 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 SYMPKQ92797 1274 aaKnown RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 CRAMP1Q96RY5 1269 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 FEZ1Q99689 392 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 CABP5Q9NP86 173 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 ZNF277Q9NRM2 450 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 NUTM1Q86Y26 1132 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 MYBBP1AQ9BQG0 1328 aaKnown RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 DDNO94850 711 aaPredicted RBP9.82□□□□□ -0.84
LIMS1-203ENST00000393310 RALBP1Q15311 655 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 FAM43AQ8N2R8 423 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 TBC1D22AQ8WUA7 517 aa9.82□□□□□ -0.84
LIMS1-203ENST00000393310 E9PSI1 815 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 USP17L8P0C7I0 530 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 OSBPP22059 807 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 VASPP50552 380 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-203ENST00000393310 COL15A1P39059 1388 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 GSTO1P78417 241 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 KIF4BQ2VIQ3 1234 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 IFNLR1Q8IU57 520 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-203ENST00000393310 SRP68Q9UHB9 627 aaKnown RBP9.81□□□□□ -0.84
LIMS1-203ENST00000393310 CNOT7Q9UIV1 285 aaKnown RBP9.81□□□□□ -0.84
LIMS1-203ENST00000393310 PTGER2P43116 358 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 BRPF1P55201 1214 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-203ENST00000393310 MRVI1Q9Y6F6 885 aa9.81□□□□□ -0.84
LIMS1-203ENST00000393310 ERVV-1B6SEH8 477 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 HLA-DOAP06340 250 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 RGS3P49796 1198 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 RBM28Q9NW13 759 aaKnown RBP9.8□□□□□ -0.84
LIMS1-203ENST00000393310 DBF4Q9UBU7 674 aaPredicted RBP9.8□□□□□ -0.84
LIMS1-203ENST00000393310 ANGEL1Q9UNK9 670 aaKnown RBP9.8□□□□□ -0.84
LIMS1-203ENST00000393310 GOLGA6L22H0YM25 854 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 FYB1O15117 783 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 TMCO4Q5TGY1 634 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 IPO8O15397 1037 aaKnown RBP9.8□□□□□ -0.84
LIMS1-203ENST00000393310 GYS1P13807 737 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 CSPP1Q1MSJ5 1256 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 HSP90AB4PQ58FF6 505 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 ZNF790Q6PG37 636 aa9.8□□□□□ -0.84
LIMS1-203ENST00000393310 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.8□□□□□ -0.84
LIMS1-203ENST00000393310 PLIN1O60240 522 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 IFIT5Q13325 482 aaKnown RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 CWC25Q9NXE8 425 aaPredicted RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 CROCC2H7BZ55 1655 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 CHD2O14647 1828 aaKnown RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 TFRCP02786 760 aaKnown RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 RASSF7Q02833 373 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 FAM161AQ3B820 660 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 NBPF10Q6P3W6 841 aaKnown RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 NBPF3Q9H094 633 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 DDX21Q9NR30 783 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 ATG3Q9NT62 314 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 BSDC1Q9NW68 430 aaPredicted RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 SBNO2Q9Y2G9 1366 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 SKIV2LQ15477 1246 aaKnown RBP9.79□□□□□ -0.84
LIMS1-203ENST00000393310 NHSL1Q5SYE7 1610 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 SPHKAPQ2M3C7 1700 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 GOLGA6L1Q8N7Z2 621 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 FAM50BQ9Y247 325 aa9.79□□□□□ -0.84
LIMS1-203ENST00000393310 FANCIQ9NVI1 1328 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 RAD17O75943 681 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 147.9 ms