RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 OVOS2A0A0J9YW53 1432 aa9.9□□□□□ -0.83
VPS13A-201ENST00000355766 OVOS2Q6IE36 1432 aa9.9□□□□□ -0.83
VPS13A-201ENST00000355766 LMO7Q8WWI1 1683 aa9.9□□□□□ -0.83
VPS13A-201ENST00000355766 ADGRB1O14514 1584 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 PTK2Q05397 1052 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 CBLBQ13191 982 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 USP35Q9P2H5 1018 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 DNMT3LQ9UJW3 386 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 PEAK1Q9H792 1746 aa9.89□□□□□ -0.83
VPS13A-201ENST00000355766 USP17L8P0C7I0 530 aa9.88□□□□□ -0.83
VPS13A-201ENST00000355766 CFAP70Q5T0N1 1121 aa9.88□□□□□ -0.83
VPS13A-201ENST00000355766 TCP11L2Q8N4U5 519 aa9.88□□□□□ -0.83
VPS13A-201ENST00000355766 PGPEP1Q9NXJ5 209 aa9.88□□□□□ -0.83
VPS13A-201ENST00000355766 POGKQ9P215 609 aa9.88□□□□□ -0.83
VPS13A-201ENST00000355766 CDV3Q9UKY7 258 aaKnown RBP9.88□□□□□ -0.83
VPS13A-201ENST00000355766 LRRC37A3O60309 1634 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 RFC5P40937 340 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 Q6ZVU0 165 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 NGDNQ8NEJ9 315 aaKnown RBP9.87□□□□□ -0.83
VPS13A-201ENST00000355766 ADAM32Q8TC27 787 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 MPHOSPH9Q99550 1183 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 GPSM3Q9Y4H4 160 aa9.87□□□□□ -0.83
VPS13A-201ENST00000355766 PLSCR1O15162 318 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 SLC24A1O60721 1099 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 ZBTB7AO95365 584 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 VSIG8P0DPA2 414 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 ZC3H6P61129 1189 aaKnown RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 INTS6LQ5JSJ4 861 aaKnown RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 LARP1Q6PKG0 1096 aaKnown RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 ZSCAN1Q8NBB4 408 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 HIRIP3Q9BW71 556 aaPredicted RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 PDGFDQ9GZP0 370 aaPredicted RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 THRAP3Q9Y2W1 955 aaKnown RBP9.86□□□□□ -0.83
VPS13A-201ENST00000355766 CPDO75976 1380 aa9.86□□□□□ -0.83
VPS13A-201ENST00000355766 COL5A2P05997 1499 aaPredicted RBP9.85□□□□□ -0.83
VPS13A-201ENST00000355766 ITSN1Q15811 1721 aa9.85□□□□□ -0.83
VPS13A-201ENST00000355766 PPFIA3O75145 1194 aa9.85□□□□□ -0.83
VPS13A-201ENST00000355766 FHDC1Q9C0D6 1143 aaPredicted RBP9.85□□□□□ -0.83
VPS13A-201ENST00000355766 TTLL8A6PVC2 850 aa9.84□□□□□ -0.83
VPS13A-201ENST00000355766 WASLO00401 505 aaPredicted RBP9.84□□□□□ -0.83
VPS13A-201ENST00000355766 EVA1CP58658 441 aa9.84□□□□□ -0.83
VPS13A-201ENST00000355766 DHX9Q08211 1270 aaKnown RBP9.84□□□□□ -0.83
VPS13A-201ENST00000355766 SYT17Q9BSW7 474 aa9.84□□□□□ -0.83
VPS13A-201ENST00000355766 TONSLQ96HA7 1378 aa9.84□□□□□ -0.83
VPS13A-201ENST00000355766 MAP3K5Q99683 1374 aa9.84□□□□□ -0.83
VPS13A-201ENST00000355766 TOPAZ1Q8N9V7 1692 aa9.83□□□□□ -0.84
VPS13A-201ENST00000355766 USP19O94966 1318 aa9.83□□□□□ -0.84
VPS13A-201ENST00000355766 CRB1P82279 1406 aa9.83□□□□□ -0.84
VPS13A-201ENST00000355766 GIGYF1O75420 1035 aaPredicted RBP9.83□□□□□ -0.84
VPS13A-201ENST00000355766 BCL9O00512 1426 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 FIGNL2A6NMB9 653 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 SPINT1O43278 529 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.82□□□□□ -0.84
VPS13A-201ENST00000355766 NUTM2GQ5VZR2 741 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 PNMA1Q8ND90 353 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 PCMTD1Q96MG8 357 aaPredicted RBP9.82□□□□□ -0.84
VPS13A-201ENST00000355766 MTFR1LQ9H019 292 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 GOPCQ9HD26 462 aa9.82□□□□□ -0.84
VPS13A-201ENST00000355766 POLR3AO14802 1390 aaPredicted RBP9.82□□□□□ -0.84
VPS13A-201ENST00000355766 AATKQ6ZMQ8 1374 aa9.81□□□□□ -0.84
VPS13A-201ENST00000355766 AGBL1Q96MI9 1066 aa9.81□□□□□ -0.84
VPS13A-201ENST00000355766 TRIM34Q9BYJ4 488 aa9.81□□□□□ -0.84
VPS13A-201ENST00000355766 STK32BQ9NY57 414 aa9.81□□□□□ -0.84
VPS13A-201ENST00000355766 TRAK1Q9UPV9 953 aa9.81□□□□□ -0.84
VPS13A-201ENST00000355766 SBF2Q86WG5 1849 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 WNK3Q9BYP7 1800 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 CEP350Q5VT06 3117 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 FAM181BA6NEQ2 426 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 PTF1AQ7RTS3 328 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 IL27Q8NEV9 243 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 TMPRSS4Q9NRS4 437 aa9.8□□□□□ -0.84
VPS13A-201ENST00000355766 SHANK3Q9BYB0 1731 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 PAPPAQ13219 1627 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 RAB15P59190 212 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 RELBQ01201 579 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 PTSQ03393 145 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 NEUROD2Q15784 382 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 SLC15A2Q16348 729 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 DDB1Q16531 1140 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 NBPF20Q3BBV1 942 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 DZIP3Q86Y13 1208 aaKnown RBP9.79□□□□□ -0.84
VPS13A-201ENST00000355766 NUDT16Q96DE0 195 aaKnown RBP9.79□□□□□ -0.84
VPS13A-201ENST00000355766 CHD4Q14839 1912 aa9.79□□□□□ -0.84
VPS13A-201ENST00000355766 ARHGEF28Q8N1W1 1705 aaKnown RBP9.79□□□□□ -0.84
VPS13A-201ENST00000355766 TXNRD1Q16881 649 aa9.78□□□□□ -0.84
VPS13A-201ENST00000355766 TMEM259Q4ZIN3 620 aa9.78□□□□□ -0.84
VPS13A-201ENST00000355766 ARXQ96QS3 562 aa9.78□□□□□ -0.84
VPS13A-201ENST00000355766 ACEP12821 1306 aa9.78□□□□□ -0.84
VPS13A-201ENST00000355766 SLIT3O75094 1523 aa9.77□□□□□ -0.84
VPS13A-201ENST00000355766 CTSOP43234 321 aaPredicted RBP9.77□□□□□ -0.85
VPS13A-201ENST00000355766 INSM2Q96T92 566 aaPredicted RBP9.77□□□□□ -0.85
VPS13A-201ENST00000355766 AKAP12Q02952 1782 aa9.76□□□□□ -0.85
VPS13A-201ENST00000355766 ESPNB1AK53 854 aa9.76□□□□□ -0.85
VPS13A-201ENST00000355766 ERVH48-1M5A8F1 160 aa9.76□□□□□ -0.85
VPS13A-201ENST00000355766 GCP02774 474 aa9.76□□□□□ -0.85
VPS13A-201ENST00000355766 ADD1P35611 737 aaKnown RBP9.76□□□□□ -0.85
VPS13A-201ENST00000355766 ABTB2Q8N961 1025 aa9.76□□□□□ -0.85
VPS13A-201ENST00000355766 MARCH10Q8NA82 808 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-201ENST00000355766 NHSQ6T4R5 1651 aa9.75□□□□□ -0.85
VPS13A-201ENST00000355766 LILRA1O75019 489 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms