RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 NBPF14Q5TI25 921 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 USPL1Q5W0Q7 1092 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 NBPF10Q6P3W6 841 aaKnown RBP26.46■■□□□ 1.83
UPF3A-201ENST00000351487 BRINP3Q76B58 766 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 NBPF15Q8N660 670 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 MTMR6Q9Y217 621 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 COL5A2P05997 1499 aaPredicted RBP26.46■■□□□ 1.83
UPF3A-201ENST00000351487 PDIA4P13667 645 aaKnown RBP26.46■■□□□ 1.83
UPF3A-201ENST00000351487 TPCN1Q9ULQ1 816 aa26.46■■□□□ 1.83
UPF3A-201ENST00000351487 ABCA3Q99758 1704 aa26.45■■□□□ 1.83
UPF3A-201ENST00000351487 ERVV-2B6SEH9 535 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 H7C1W4 665 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 ANKRD1Q15327 319 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 BLOC1S2Q6QNY1 142 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 TSPY26PQ9H489 355 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 TAF5LO75529 589 aa26.45■■□□□ 1.82
UPF3A-201ENST00000351487 ZCRB1Q8TBF4 217 aaKnown RBP26.45■■□□□ 1.82
UPF3A-201ENST00000351487 UBE2HP62256 183 aa26.44■■□□□ 1.82
UPF3A-201ENST00000351487 EDC3Q96F86 508 aaKnown RBP26.44■■□□□ 1.82
UPF3A-201ENST00000351487 RPS6KB1P23443 525 aa26.43■■□□□ 1.82
UPF3A-201ENST00000351487 NKX1-1Q15270 411 aaPredicted RBP26.43■■□□□ 1.82
UPF3A-201ENST00000351487 HAUS7Q99871 368 aa26.43■■□□□ 1.82
UPF3A-201ENST00000351487 FOXO4P98177 505 aa26.43■■□□□ 1.82
UPF3A-201ENST00000351487 PRDM11Q9NQV5 511 aa26.43■■□□□ 1.82
UPF3A-201ENST00000351487 TNS2Q63HR2 1409 aa26.43■■□□□ 1.82
UPF3A-201ENST00000351487 LMBR1LQ6UX01 489 aa26.42■■□□□ 1.82
UPF3A-201ENST00000351487 DDX54Q8TDD1 881 aaKnown RBP26.42■■□□□ 1.82
UPF3A-201ENST00000351487 DBNDD2Q9BQY9 259 aa26.42■■□□□ 1.82
UPF3A-201ENST00000351487 CSPP1Q1MSJ5 1256 aa26.42■■□□□ 1.82
UPF3A-201ENST00000351487 ZNF609O15014 1411 aa26.42■■□□□ 1.82
UPF3A-201ENST00000351487 CCDC183Q5T5S1 534 aa26.41■■□□□ 1.82
UPF3A-201ENST00000351487 KLHL34Q8N239 644 aa26.41■■□□□ 1.82
UPF3A-201ENST00000351487 COL9A3Q14050 684 aaPredicted RBP26.41■■□□□ 1.82
UPF3A-201ENST00000351487 KRT32Q14532 448 aa26.41■■□□□ 1.82
UPF3A-201ENST00000351487 TOM1L2Q6ZVM7 507 aa26.41■■□□□ 1.82
UPF3A-201ENST00000351487 TAF6LQ9Y6J9 622 aa26.41■■□□□ 1.82
UPF3A-201ENST00000351487 SOS2Q07890 1332 aaPredicted RBP26.4■■□□□ 1.82
UPF3A-201ENST00000351487 NECAB1Q8N987 351 aa26.4■■□□□ 1.82
UPF3A-201ENST00000351487 CWC25Q9NXE8 425 aaPredicted RBP26.4■■□□□ 1.82
UPF3A-201ENST00000351487 GPR108Q9NPR9 543 aa26.39■■□□□ 1.82
UPF3A-201ENST00000351487 TOB2Q14106 344 aaPredicted RBP26.39■■□□□ 1.81
UPF3A-201ENST00000351487 TTLL7Q6ZT98 887 aa26.39■■□□□ 1.81
UPF3A-201ENST00000351487 TICAM2Q86XR7 235 aa26.38■■□□□ 1.81
UPF3A-201ENST00000351487 PALLDQ8WX93 1383 aa26.38■■□□□ 1.81
UPF3A-201ENST00000351487 LETM1O95202 739 aaPredicted RBP26.38■■□□□ 1.81
UPF3A-201ENST00000351487 ATG9AQ7Z3C6 839 aa26.38■■□□□ 1.81
UPF3A-201ENST00000351487 FIBPO43427 364 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 FAM184AQ8NB25 1140 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 CCDC191Q8NCU4 936 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 SPEF2Q9C093 1822 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 SH3TC1Q8TE82 1336 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 PDCP20941 246 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 DNAJC2Q99543 621 aaKnown RBP26.37■■□□□ 1.81
UPF3A-201ENST00000351487 CARD10Q9BWT7 1032 aa26.37■■□□□ 1.81
UPF3A-201ENST00000351487 NOL7Q9UMY1 257 aaKnown RBP26.37■■□□□ 1.81
UPF3A-201ENST00000351487 U3KPZ7 1027 aaPredicted RBP26.37■■□□□ 1.81
UPF3A-201ENST00000351487 IL2RBP14784 551 aa26.36■■□□□ 1.81
UPF3A-201ENST00000351487 DNM1Q05193 864 aaKnown RBP26.36■■□□□ 1.81
UPF3A-201ENST00000351487 KBTBD3Q8NAB2 608 aa26.36■■□□□ 1.81
UPF3A-201ENST00000351487 RNF214Q8ND24 703 aa26.36■■□□□ 1.81
UPF3A-201ENST00000351487 TOGARAM1Q9Y4F4 1720 aa26.36■■□□□ 1.81
UPF3A-201ENST00000351487 MSNP26038 577 aaKnown RBP26.35■■□□□ 1.81
UPF3A-201ENST00000351487 MCMDC2Q4G0Z9 681 aa26.35■■□□□ 1.81
UPF3A-201ENST00000351487 VPS37CA5D8V6 355 aaPredicted RBP26.35■■□□□ 1.81
UPF3A-201ENST00000351487 LARP1BQ659C4 914 aaKnown RBP26.34■■□□□ 1.81
UPF3A-201ENST00000351487 TCEANC2Q96MN5 208 aa26.34■■□□□ 1.81
UPF3A-201ENST00000351487 NDUFB9Q9Y6M9 179 aa26.34■■□□□ 1.81
UPF3A-201ENST00000351487 A1BGP04217 495 aa26.34■■□□□ 1.81
UPF3A-201ENST00000351487 IL15P40933 162 aaPredicted RBP26.34■■□□□ 1.81
UPF3A-201ENST00000351487 CHMP3Q9Y3E7 222 aa26.34■■□□□ 1.81
UPF3A-201ENST00000351487 HSPA2P54652 639 aa26.33■■□□□ 1.81
UPF3A-201ENST00000351487 ATG3Q9NT62 314 aa26.33■■□□□ 1.81
UPF3A-201ENST00000351487 LAMA4Q16363 1823 aa26.33■■□□□ 1.8
UPF3A-201ENST00000351487 UVSSAQ2YD98 709 aa26.33■■□□□ 1.8
UPF3A-201ENST00000351487 DDX46Q7L014 1031 aaKnown RBP26.33■■□□□ 1.8
UPF3A-201ENST00000351487 NAP1L5Q96NT1 182 aaPredicted RBP26.33■■□□□ 1.8
UPF3A-201ENST00000351487 NEK1Q96PY6 1258 aa26.33■■□□□ 1.8
UPF3A-201ENST00000351487 CIAO1O76071 339 aa26.31■■□□□ 1.8
UPF3A-201ENST00000351487 DTNBO60941 627 aa26.31■■□□□ 1.8
UPF3A-201ENST00000351487 CCDC129Q6ZRS4 1044 aa26.31■■□□□ 1.8
UPF3A-201ENST00000351487 CDC37L1Q7L3B6 337 aa26.31■■□□□ 1.8
UPF3A-201ENST00000351487 SEC62Q99442 399 aaKnown RBP26.31■■□□□ 1.8
UPF3A-201ENST00000351487 EYA2O00167 538 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 ZBTB3Q9H5J0 574 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 ELP1O95163 1332 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 CHGBP05060 677 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 CYP21A2P08686 494 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 PAG1Q9NWQ8 432 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 EIF2AK3Q9NZJ5 1116 aaKnown RBP26.3■■□□□ 1.8
UPF3A-201ENST00000351487 CCDC39Q9UFE4 941 aa26.3■■□□□ 1.8
UPF3A-201ENST00000351487 MCM5P33992 734 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 KRT85P78386 507 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 HELLSQ9NRZ9 838 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 STRCQ7RTU9 1775 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 GTF3C6Q969F1 213 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 ZKSCAN5Q9Y2L8 839 aa26.29■■□□□ 1.8
UPF3A-201ENST00000351487 ZNF500O60304 480 aaPredicted RBP26.28■■□□□ 1.8
UPF3A-201ENST00000351487 ISCA1Q9BUE6 129 aa26.28■■□□□ 1.8
UPF3A-201ENST00000351487 SLAIN2Q9P270 581 aa26.28■■□□□ 1.8
UPF3A-201ENST00000351487 NEUROD6Q96NK8 337 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms