RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 TDRD7Q8NHU6 1098 aaKnown RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 EAF2Q96CJ1 260 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 FEZ1Q99689 392 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 TRMT1Q9NXH9 659 aaKnown RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 OGFRQ9NZT2 677 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 BECN2A8MW95 431 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 HIP1O00291 1037 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 TOB2Q14106 344 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 BRF1Q92994 677 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 AMOTL2Q9Y2J4 779 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 PAXBP1Q9Y5B6 917 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 PPFIA3O75145 1194 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 MPRIPQ6WCQ1 1025 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 KCNB2Q92953 911 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 EDC3Q96F86 508 aaKnown RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 BABAM1Q9NWV8 329 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 NAP1L2Q9ULW6 460 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-202ENST00000347037 NALCNQ8IZF0 1738 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 FMN2Q9NZ56 1722 aa13.07□□□□□ -0.32
SYNE1-202ENST00000347037 ZNF589Q86UQ0 364 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-202ENST00000347037 KLHL34Q8N239 644 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 KLHDC4Q8TBB5 520 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 LRRC2Q9BYS8 371 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 CGNQ9P2M7 1197 aaKnown RBP13.06□□□□□ -0.32
SYNE1-202ENST00000347037 NPHP1O15259 732 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-202ENST00000347037 ADCY9O60503 1353 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 USP27XA6NNY8 438 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 PROSER3Q2NL68 480 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
SYNE1-202ENST00000347037 C11orf57Q6ZUT1 292 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-202ENST00000347037 CCDC9Q9Y3X0 531 aaKnown RBP13.05□□□□□ -0.32
SYNE1-202ENST00000347037 PDIA4P13667 645 aaKnown RBP13.05□□□□□ -0.32
SYNE1-202ENST00000347037 USP16Q9Y5T5 823 aa13.05□□□□□ -0.32
SYNE1-202ENST00000347037 NDUFB9Q9Y6M9 179 aa13.05□□□□□ -0.32
SYNE1-202ENST00000347037 USP54Q70EL1 1684 aa13.05□□□□□ -0.32
SYNE1-202ENST00000347037 SASH1O94885 1247 aa13.05□□□□□ -0.32
SYNE1-202ENST00000347037 PTPN14Q15678 1187 aa13.05□□□□□ -0.32
SYNE1-202ENST00000347037 BICC1Q9H694 974 aaKnown RBP13.05□□□□□ -0.32
SYNE1-202ENST00000347037 DBF4Q9UBU7 674 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-202ENST00000347037 SKILP12757 684 aa13.04□□□□□ -0.32
SYNE1-202ENST00000347037 SUCLG2Q96I99 432 aa13.04□□□□□ -0.32
SYNE1-202ENST00000347037 FTOQ9C0B1 505 aaKnown RBP eCLIP13.04□□□□□ -0.32
SYNE1-202ENST00000347037 LRRC8AQ8IWT6 810 aa13.04□□□□□ -0.32
SYNE1-202ENST00000347037 ERCC4Q92889 916 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-202ENST00000347037 ZNF530Q6P9A1 599 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-202ENST00000347037 Q6ZUG5 572 aa13.04□□□□□ -0.32
SYNE1-202ENST00000347037 CACNA1FO60840 1977 aa13.04□□□□□ -0.32
SYNE1-202ENST00000347037 PRAMEF22A3QJZ6 481 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 MTX1Q13505 466 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
SYNE1-202ENST00000347037 NWD1Q149M9 1564 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 CFAP45Q9UL16 551 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 ZNF215Q9UL58 517 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-202ENST00000347037 CCDC129Q6ZRS4 1044 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 RBM43Q6ZSC3 357 aaKnown RBP13.03□□□□□ -0.32
SYNE1-202ENST00000347037 NEK1Q96PY6 1258 aa13.03□□□□□ -0.32
SYNE1-202ENST00000347037 CCDC69A6NI79 296 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 RESTQ13127 1097 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 KSR2Q6VAB6 950 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 CCDC73Q6ZRK6 1079 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 GTF3C6Q969F1 213 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 CHMP4AQ9BY43 222 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 LRRC37A3O60309 1634 aa13.02□□□□□ -0.32
SYNE1-202ENST00000347037 STRCP1A6NGW2 1772 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 CHGBP05060 677 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 STX1AQ16623 288 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 NBPF6Q5VWK0 638 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 NBPF4Q96M43 638 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 DNAJC2Q99543 621 aaKnown RBP13.02□□□□□ -0.33
SYNE1-202ENST00000347037 GRM8O00222 908 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 ALDH1L1O75891 902 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 GUCY1B3Q02153 619 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 SYCP1Q15431 976 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 DDX41Q9UJV9 622 aaKnown RBP13.02□□□□□ -0.33
SYNE1-202ENST00000347037 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.33
SYNE1-202ENST00000347037 KINO60870 393 aaKnown RBP13.01□□□□□ -0.33
SYNE1-202ENST00000347037 HMG20BQ9P0W2 317 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 HOXB7P09629 217 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 KIF18AQ8NI77 898 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 LRRC59Q96AG4 307 aaKnown RBP13.01□□□□□ -0.33
SYNE1-202ENST00000347037 SYTL4Q96C24 671 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-202ENST00000347037 EID1Q9Y6B2 187 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 IQCB1Q15051 598 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 ELF2Q15723 593 aa13.01□□□□□ -0.33
SYNE1-202ENST00000347037 NPHP4O75161 1426 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-202ENST00000347037 TAF5LO75529 589 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 ME1P48163 572 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 CCT2P78371 535 aaKnown RBP13□□□□□ -0.33
SYNE1-202ENST00000347037 AOPEPQ8N6M6 819 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 SEC62Q99442 399 aaKnown RBP13□□□□□ -0.33
SYNE1-202ENST00000347037 GOLPH3LQ9H4A5 285 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 CDC25BP30305 580 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 KRT32Q14532 448 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 KMT5BQ4FZB7 885 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 RIC3Q7Z5B4 369 aa13□□□□□ -0.33
SYNE1-202ENST00000347037 ZSCAN16Q9H4T2 348 aaPredicted RBP13□□□□□ -0.33
SYNE1-202ENST00000347037 CAVIN2O95810 425 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 SCRN1Q12765 414 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 ZRSR1Q15695 479 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms