RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 DUX4L5P0CJ88 424 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 DUX4L6P0CJ89 424 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 DUX4L7P0CJ90 424 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 DEUP1Q05D60 604 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 DUX4Q9UBX2 424 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 PFDN1O60925 122 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 TRIM60Q495X7 471 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 OLFM4Q6UX06 510 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 UACAQ9BZF9 1416 aa4.3□□□□□ -1.72
SYNE2-202ENST00000344113 ZKSCAN1P17029 563 aaPredicted RBP4.3□□□□□ -1.72
SYNE2-202ENST00000344113 INTS4Q96HW7 963 aaKnown RBP4.3□□□□□ -1.72
SYNE2-202ENST00000344113 RB1CC1Q8TDY2 1594 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 MYCNP04198 464 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 TMEM57Q8N5G2 664 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 MORC4Q8TE76 937 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 RUFY2Q8WXA3 655 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 JAKMIP1Q96N16 626 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SEC63Q9UGP8 760 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SPZ1Q9BXG8 430 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 CASQ2O14958 399 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 EXOC1Q9NV70 894 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ATP8A1Q9Y2Q0 1164 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 PDLIM1O00151 329 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 NEBLO76041 1014 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ABCD1P33897 745 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 DHX9Q08211 1270 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ZSCAN26Q16670 478 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 NAF1Q96HR8 494 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 MAP4K4O95819 1239 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ZNF483Q8TF39 744 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 BICD1Q96G01 975 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ANTXR1Q9H6X2 564 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 POGKQ9P215 609 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 NFXL1Q6ZNB6 911 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 TMTC2Q8N394 836 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 MIGA1Q8NAN2 632 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 TBC1D2BQ9UPU7 963 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 CAPN2P17655 700 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 APBA1Q02410 837 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 MYSM1Q5VVJ2 828 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 ANLNQ9NQW6 1124 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 CNGA1P29973 690 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 RUFY3Q7L099 469 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 TEX9Q8N6V9 391 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 EP400NLQ6ZTU2 488 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 TEKT4Q8WW24 435 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 RRP7AQ9Y3A4 280 aaKnown RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 E7ENQ6 273 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 RAB3GAP1Q15042 981 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 C17orf50Q8WW18 174 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 VIPAS39Q9H9C1 493 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 NDUFA13Q9P0J0 144 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 IMPACTQ9P2X3 320 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 KCNG1Q9UIX4 513 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 CABS1Q96KC9 395 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 RAB3IPQ96QF0 476 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SFPQP23246 707 aaKnown RBP eCLIP4.29□□□□□ -1.72
SYNE2-202ENST00000344113 CACNA2D4Q7Z3S7 1137 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SMC1BQ8NDV3 1235 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 KIF2CQ99661 725 aa4.29□□□□□ -1.72
SYNE2-202ENST00000344113 SUZ12Q15022 739 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 TRIM4Q9C037 500 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ARHGAP31Q2M1Z3 1444 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 GCFC2P16383 781 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 USH1GQ495M9 461 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 NXNQ6DKJ4 435 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 PPFIBP1Q86W92 1011 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 AGAP3Q96P47 875 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 USO1O60763 962 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 KRT4P19013 534 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ALDH3A1P30838 453 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ZNF131P52739 623 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 PHLDB3Q6NSJ2 640 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 PPP1R14CQ8TAE6 165 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ZFAND2BQ8WV99 257 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 HNRNPLLQ8WVV9 542 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 RGL1Q9NZL6 768 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 MYO1CO00159 1063 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 POLR2EP19388 210 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 NOP14P78316 857 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ERCC6LQ2NKX8 1250 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 CRELD2Q6UXH1 353 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 GBP5Q96PP8 586 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 MSANTD4Q8NCY6 345 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 DNAJC25Q9H1X3 360 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 BCAP29Q9UHQ4 241 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 CAMSAP2Q08AD1 1489 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 SERPINI2O75830 405 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 GSTA2P09210 222 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 BTN2A1Q7KYR7 527 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 FCHSD1Q86WN1 690 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 CEP57L1Q8IYX8 460 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 TBC1D31Q96DN5 1066 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 RHOXF2BP0C7M4 288 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 PARP10Q53GL7 1025 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 INTS3Q68E01 1043 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 RHOXF2Q9BQY4 288 aa4.28□□□□□ -1.72
SYNE2-202ENST00000344113 ESF1Q9H501 851 aaKnown RBP4.28□□□□□ -1.72
SYNE2-202ENST00000344113 COQ9O75208 318 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms