RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LRP2BPQ9P2M1 347 aa16.24■□□□□ 0.19
COL7A1-201ENST00000328333 ATF3P18847 181 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 SYT1P21579 422 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 EPRSP07814 1512 aaKnown RBP16.23■□□□□ 0.19
COL7A1-201ENST00000328333 MYO1BO43795 1136 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 AFAP1L1Q8TED9 768 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 TRERF1Q96PN7 1200 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 CTTNBP2Q8WZ74 1663 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 PRC1O43663 620 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 PPFIA2O75334 1257 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 RPUSD2Q8IZ73 545 aaKnown RBP16.23■□□□□ 0.19
COL7A1-201ENST00000328333 BCAP29Q9UHQ4 241 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 BUB1BO60566 1050 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-201ENST00000328333 SYKP43405 635 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 SLFN5Q08AF3 891 aa16.23■□□□□ 0.19
COL7A1-201ENST00000328333 NKIRAS1Q9NYS0 192 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 IBSPP21815 317 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-201ENST00000328333 DZIP1Q86YF9 867 aaKnown RBP16.22■□□□□ 0.19
COL7A1-201ENST00000328333 SPG7Q9UQ90 795 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 CFAP58Q5T655 872 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 TRPC3Q13507 836 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 BICDL1Q6ZP65 573 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 VPS18Q9P253 973 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 RBM27Q9P2N5 1060 aaKnown RBP16.22■□□□□ 0.19
COL7A1-201ENST00000328333 IGHMBP2P38935 993 aaKnown RBP16.22■□□□□ 0.19
COL7A1-201ENST00000328333 SNX21Q969T3 373 aa16.22■□□□□ 0.19
COL7A1-201ENST00000328333 MAP3K21Q5TCX8 1036 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 INTS8Q75QN2 995 aaKnown RBP16.21■□□□□ 0.19
COL7A1-201ENST00000328333 SMC1BQ8NDV3 1235 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 VCX3AQ9NNX9 186 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 MAP3K12Q12852 859 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 TRIM14Q14142 442 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 MAP3K1Q13233 1512 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 UBA7P41226 1012 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 ERO1AQ96HE7 468 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 SEPT14Q6ZU15 432 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 MSANTD4Q8NCY6 345 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 PCK1P35558 622 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 PRPF40BQ6NWY9 871 aaKnown RBP16.21■□□□□ 0.19
COL7A1-201ENST00000328333 CSRNP2Q9H175 543 aa16.21■□□□□ 0.19
COL7A1-201ENST00000328333 RAD50Q92878 1312 aa16.21■□□□□ 0.18
COL7A1-201ENST00000328333 PSMA7O14818 248 aa16.21■□□□□ 0.18
COL7A1-201ENST00000328333 TAOK1Q7L7X3 1001 aa16.21■□□□□ 0.18
COL7A1-201ENST00000328333 ZSCAN22P10073 491 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-201ENST00000328333 TRAF1Q13077 416 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 CFTRP13569 1480 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 TRIM47Q96LD4 638 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 HCLS1P14317 486 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-201ENST00000328333 PPFIA1Q13136 1202 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 FERMT3Q86UX7 667 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 TSR2Q969E8 191 aaKnown RBP16.2■□□□□ 0.18
COL7A1-201ENST00000328333 MYCBPQ99417 103 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-201ENST00000328333 INPP5BP32019 993 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 CCDC62Q6P9F0 684 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 DNAI1Q9UI46 699 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 ODF2LQ9ULJ1 636 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 NUF2Q9BZD4 464 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 SIL1Q9H173 461 aa16.2■□□□□ 0.18
COL7A1-201ENST00000328333 MAP2K2P36507 400 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 CLNS1AP54105 237 aaKnown RBP16.19■□□□□ 0.18
COL7A1-201ENST00000328333 CFAP157Q5JU67 520 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 ABTB2Q8N961 1025 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 SPAG5Q96R06 1193 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 SSFA2P28290 1259 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 SUDS3Q9H7L9 328 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-201ENST00000328333 AFAP1L2Q8N4X5 818 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 TMEM57Q8N5G2 664 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 ANKRD24Q8TF21 1146 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 TATP17735 454 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-201ENST00000328333 GJB2P29033 226 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 NLRP6P59044 892 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 NFE2L2Q16236 605 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 GABPB2Q8TAK5 448 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-201ENST00000328333 NPHP3Q7Z494 1330 aa16.19■□□□□ 0.18
COL7A1-201ENST00000328333 TPD52P55327 224 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-201ENST00000328333 ACTN4O43707 911 aaKnown RBP16.18■□□□□ 0.18
COL7A1-201ENST00000328333 ANO6Q4KMQ2 910 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 GBP7Q8N8V2 638 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-201ENST00000328333 CCDC26Q8TAB7 109 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 RPGRIP1Q96KN7 1286 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 NBPF7P0C2Y1 421 aaPredicted RBP16.18■□□□□ 0.18
COL7A1-201ENST00000328333 NEDD9Q14511 834 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 TBCAO75347 108 aaKnown RBP16.18■□□□□ 0.18
COL7A1-201ENST00000328333 PLCB1Q9NQ66 1216 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 TMOD2Q9NZR1 351 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 ZNF652Q9Y2D9 606 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 TMTC2Q8N394 836 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 WDR78Q5VTH9 848 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 RUFY4Q6ZNE9 571 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 SLC8A1P32418 973 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 PSMC4P43686 418 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 NUTM1Q86Y26 1132 aa16.18■□□□□ 0.18
COL7A1-201ENST00000328333 CC2D2AQ9P2K1 1620 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 GGNBP2Q9H3C7 697 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 TXNDC16Q9P2K2 825 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 ELP1O95163 1332 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 PPP1R2P41236 205 aa16.17■□□□□ 0.18
COL7A1-201ENST00000328333 IQCDQ96DY2 449 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms