RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 RUNDC1Q96C34 613 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 YY1AP1Q9H869 796 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 ZNF287Q9HBT7 754 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 TTC21AQ8NDW8 1320 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 NFXL1Q6ZNB6 911 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 BATF3Q9NR55 127 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 RFC1P35251 1148 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-201ENST00000297405 PPP1R2P41236 205 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 IKQ13123 557 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-201ENST00000297405 CEP85LQ5SZL2 805 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 LZICQ8WZA0 190 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 GIMAP4Q9NUV9 329 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 FIBPO43427 364 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 ACTN2P35609 894 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 HLTFQ14527 1009 aaKnown RBP eCLIP5.51□□□□□ -1.53
CSMD3-201ENST00000297405 CWC27Q6UX04 472 aaKnown RBP5.51□□□□□ -1.53
CSMD3-201ENST00000297405 FAM200AQ8TCP9 573 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 NEK1Q96PY6 1258 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 SCINQ9Y6U3 715 aa5.51□□□□□ -1.53
CSMD3-201ENST00000297405 SPTBN1Q01082 2364 aaKnown RBP5.51□□□□□ -1.53
CSMD3-201ENST00000297405 PPFIA4O75335 1185 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 URI1O94763 535 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 ESRRGP62508 458 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 LRSAM1Q6UWE0 723 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 FAF1Q9UNN5 650 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 SPDL1Q96EA4 605 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 MPHOSPH8Q99549 860 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 A0A1W2PRG0 241 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 BRD3Q15059 726 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 LARP1BQ659C4 914 aaKnown RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 TSKSQ9UJT2 592 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 SRGAP3O43295 1099 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 VPS53Q5VIR6 699 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 CRBNQ96SW2 442 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 MIS18AQ9NYP9 233 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 PRC1O43663 620 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 MTMR3Q13615 1198 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 ARHGAP18Q8N392 663 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 PPP1R14CQ8TAE6 165 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 EFCAB5A4FU69 1503 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 TMCO5AQ8N6Q1 288 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 TRIM6Q9C030 488 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 SYCE3A1L190 88 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 FLOT1O75955 427 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 TRIM14Q14142 442 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 CSRNP2Q9H175 543 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 RMND1Q9NWS8 449 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 TMEM232C9JQI7 657 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 NDUFAB1O14561 156 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC88AQ3V6T2 1871 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 CHD3Q12873 2000 aaKnown RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 HSPA8P11142 646 aaKnown RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 AMPD3Q01432 767 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 ENAHQ8N8S7 591 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-201ENST00000297405 CTTNBP2NLQ9P2B4 639 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 PCYT1AP49585 367 aa5.5□□□□□ -1.53
CSMD3-201ENST00000297405 ACTN4O43707 911 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CCT4P50991 539 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 INTS8Q75QN2 995 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 INTS1Q8N201 2190 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 HEATR3Q7Z4Q2 680 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CARMIL2Q6F5E8 1435 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 NBPF6Q5VWK0 638 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 NBPF5PQ86XG9 351 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CNGA4Q8IV77 575 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 TCP11Q8WWU5 503 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 NBPF4Q96M43 638 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 EVC2Q86UK5 1308 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 ANKRD27Q96NW4 1050 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CHD5Q8TDI0 1954 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CEP250Q9BV73 2442 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 ABCC8Q09428 1581 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 STXBP4Q6ZWJ1 553 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 ATRIPQ8WXE1 791 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 IFT81Q8WYA0 676 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 DIABLOQ9NR28 239 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 NKIRAS1Q9NYS0 192 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 U3KPZ7 1027 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 ADCY5O95622 1261 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 TROVE2P10155 538 aaKnown RBP eCLIP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 TRIM60Q495X7 471 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC124Q96CT7 223 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CABS1Q96KC9 395 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 TUBB6Q9BUF5 446 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 GEMIN8Q9NWZ8 242 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 RAB11FIP4Q86YS3 637 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 SEPT8Q92599 483 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 PAWRQ96IZ0 340 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 NCAPD3P42695 1498 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 LMNAP02545 664 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 CEBPZQ03701 1054 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 PIP4K2CQ8TBX8 421 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 COPG1Q9Y678 874 aaKnown RBP5.49□□□□□ -1.53
CSMD3-201ENST00000297405 FHOD3Q2V2M9 1422 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 MSANTD4Q8NCY6 345 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 ARMC2Q8NEN0 867 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 MICAL1Q8TDZ2 1067 aa5.49□□□□□ -1.53
CSMD3-201ENST00000297405 GOLGA6CA6NDK9 693 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 GOLGA6BA6NDN3 693 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms