RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 HMG20BQ9P0W2 317 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 ZBTB43O43298 467 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 ZSCAN22P10073 491 aaPredicted RBP13.17□□□□□ -0.3
USP53-201ENST00000274030 CCDC152Q4G0S7 254 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 PICALMQ13492 652 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 CCDC150Q8NCX0 1101 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 JADE2Q9NQC1 790 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 SHTN1A0MZ66 631 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 RRP9O43818 475 aaKnown RBP13.17□□□□□ -0.3
USP53-201ENST00000274030 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 ATP6V1AP38606 617 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 HELBQ8NG08 1087 aaPredicted RBP13.17□□□□□ -0.3
USP53-201ENST00000274030 ZCRB1Q8TBF4 217 aaKnown RBP13.17□□□□□ -0.3
USP53-201ENST00000274030 CETN1Q12798 172 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 SNW1Q13573 536 aaKnown RBP13.17□□□□□ -0.3
USP53-201ENST00000274030 SLC9C2Q5TAH2 1124 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 Q6ZUG5 572 aa13.17□□□□□ -0.3
USP53-201ENST00000274030 GNG11P61952 73 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 GRM8O00222 908 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 IFIT1BQ5T764 474 aaKnown RBP13.16□□□□□ -0.3
USP53-201ENST00000274030 EHMT1Q9H9B1 1298 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 HOOK3Q86VS8 718 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 ZBTB9Q96C00 473 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 UQCRFS1P1P0C7P4 283 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 GSDMDP57764 484 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 RRAGBQ5VZM2 374 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 HEATR3Q7Z4Q2 680 aa13.16□□□□□ -0.3
USP53-201ENST00000274030 ESYT1Q9BSJ8 1104 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 SPDYE4A6NLX3 237 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 CWF19L2Q2TBE0 894 aaKnown RBP13.15□□□□□ -0.3
USP53-201ENST00000274030 USP48Q86UV5 1035 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 KIF14Q15058 1648 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 RBM25P49756 843 aaKnown RBP13.15□□□□□ -0.3
USP53-201ENST00000274030 CCDC91Q7Z6B0 441 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 TSPYL6Q8N831 410 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 ALS2CR12Q96Q35 445 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 HDAC1Q13547 482 aaPredicted RBP13.15□□□□□ -0.3
USP53-201ENST00000274030 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 ANO6Q4KMQ2 910 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 RNF187Q5TA31 235 aaPredicted RBP13.15□□□□□ -0.3
USP53-201ENST00000274030 JAG2Q9Y219 1238 aa13.15□□□□□ -0.3
USP53-201ENST00000274030 NSD2O96028 1365 aa13.15□□□□□ -0.31
USP53-201ENST00000274030 IL16Q14005 1332 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 UBASH3AP57075 661 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 DNM1Q05193 864 aaKnown RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 DRC1Q96MC2 740 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 PSMD1Q99460 953 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 EXOC1Q9NV70 894 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 NIP7Q9Y221 180 aaKnown RBP eCLIP13.14□□□□□ -0.31
USP53-201ENST00000274030 KAT6BQ8WYB5 2073 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 AKR1B10O60218 316 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 WDHD1O75717 1129 aaPredicted RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 EIF4A2Q14240 407 aaKnown RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 RTN1Q16799 776 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 ANKRD44Q8N8A2 993 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 NFATC2IPQ8NCF5 419 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 NBPF7P0C2Y1 421 aaPredicted RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 MCMDC2Q4G0Z9 681 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 MRPL50Q8N5N7 158 aaKnown RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 BICD1Q96G01 975 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 SETDB2Q96T68 719 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 ANKRD36BQ8N2N9 1353 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 NMIQ13287 307 aaPredicted RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 MTHFSDQ2M296 383 aaKnown RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 ZSCAN16Q9H4T2 348 aaPredicted RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 RPRD2Q5VT52 1461 aaKnown RBP13.14□□□□□ -0.31
USP53-201ENST00000274030 PKNOX2Q96KN3 472 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 DACT1Q9NYF0 836 aa13.14□□□□□ -0.31
USP53-201ENST00000274030 PTGS1P23219 599 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 PPM1FP49593 454 aaPredicted RBP13.13□□□□□ -0.31
USP53-201ENST00000274030 MIGA1Q8NAN2 632 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 ESR2Q92731 530 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 TBCAO75347 108 aaKnown RBP13.13□□□□□ -0.31
USP53-201ENST00000274030 NAA16Q6N069 864 aaPredicted RBP13.13□□□□□ -0.31
USP53-201ENST00000274030 FERMT2Q96AC1 680 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 NEMFO60524 1076 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 STAT6P42226 847 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 ST5P78524 1137 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 ATP8B2P98198 1209 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 KSR2Q6VAB6 950 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 ZFP91Q96JP5 570 aaPredicted RBP13.13□□□□□ -0.31
USP53-201ENST00000274030 FAM107BQ9H098 131 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 CEP135Q66GS9 1140 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 KANK3Q6NY19 840 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 MAATS1Q7Z4T9 603 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 TTC16Q8NEE8 873 aa13.13□□□□□ -0.31
USP53-201ENST00000274030 GTF2F1P35269 517 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP53-201ENST00000274030 ARHGAP45Q92619 1136 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 KRT23Q9C075 422 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 FANCAO15360 1455 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 RXRAP19793 462 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 HMGB2P26583 209 aaKnown RBP13.12□□□□□ -0.31
USP53-201ENST00000274030 SMARCC1Q92922 1105 aaPredicted RBP13.12□□□□□ -0.31
USP53-201ENST00000274030 NLRP3Q96P20 1036 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 DNAJC25Q9H1X3 360 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 CGNQ9P2M7 1197 aaKnown RBP13.12□□□□□ -0.31
USP53-201ENST00000274030 FAM114A1Q8IWE2 563 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms