RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 KDM6AO15550 1401 aaPredicted RBP19.84■□□□□ 0.77
VPS54-201ENST00000272322 MAP4K1Q92918 833 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 DCAF5Q96JK2 942 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 HAND2P61296 217 aa19.83■□□□□ 0.76
VPS54-201ENST00000272322 DNTTIP2Q5QJE6 756 aaKnown RBP19.83■□□□□ 0.76
VPS54-201ENST00000272322 SPC24Q8NBT2 197 aa19.83■□□□□ 0.76
VPS54-201ENST00000272322 MEGF6O75095 1541 aa19.83■□□□□ 0.76
VPS54-201ENST00000272322 C1orf167Q5SNV9 1468 aa19.83■□□□□ 0.76
VPS54-201ENST00000272322 GOLGA6L4A6NEF3 574 aa19.82■□□□□ 0.76
VPS54-201ENST00000272322 GORABQ5T7V8 394 aa19.82■□□□□ 0.76
VPS54-201ENST00000272322 BRF1Q92994 677 aa19.82■□□□□ 0.76
VPS54-201ENST00000272322 BCL11BQ9C0K0 894 aaPredicted RBP19.82■□□□□ 0.76
VPS54-201ENST00000272322 FAM89AQ96GI7 184 aa19.81■□□□□ 0.76
VPS54-201ENST00000272322 TTC12Q9H892 705 aaPredicted RBP19.81■□□□□ 0.76
VPS54-201ENST00000272322 RNF20Q5VTR2 975 aa19.81■□□□□ 0.76
VPS54-201ENST00000272322 TAF5LO75529 589 aa19.8■□□□□ 0.76
VPS54-201ENST00000272322 TTLL5Q6EMB2 1281 aa19.8■□□□□ 0.76
VPS54-201ENST00000272322 PI16Q6UXB8 463 aa19.8■□□□□ 0.76
VPS54-201ENST00000272322 NCOA5Q9HCD5 579 aaKnown RBP19.8■□□□□ 0.76
VPS54-201ENST00000272322 PXDNLA1KZ92 1463 aa19.8■□□□□ 0.76
VPS54-201ENST00000272322 A0A087WWV3 80 aa19.79■□□□□ 0.76
VPS54-201ENST00000272322 Q6ZUG5 572 aa19.79■□□□□ 0.76
VPS54-201ENST00000272322 MARF1Q9Y4F3 1742 aaKnown RBP19.79■□□□□ 0.76
VPS54-201ENST00000272322 ZCRB1Q8TBF4 217 aaKnown RBP19.79■□□□□ 0.76
VPS54-201ENST00000272322 PSMA5P28066 241 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 TTC6Q86TZ1 520 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 FTOQ9C0B1 505 aaKnown RBP eCLIP19.78■□□□□ 0.76
VPS54-201ENST00000272322 CYP21A2P08686 494 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 WASHC4Q2M389 1173 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 LIG1P18858 919 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 TOB2Q14106 344 aaPredicted RBP19.78■□□□□ 0.76
VPS54-201ENST00000272322 TAF7LQ5H9L4 462 aa19.78■□□□□ 0.76
VPS54-201ENST00000272322 GPHNQ9NQX3 736 aaPredicted RBP19.78■□□□□ 0.76
VPS54-201ENST00000272322 H3BQV1 296 aa19.77■□□□□ 0.76
VPS54-201ENST00000272322 IFFO2Q5TF58 517 aa19.77■□□□□ 0.76
VPS54-201ENST00000272322 STK11IPQ8N1F8 1099 aa19.77■□□□□ 0.76
VPS54-201ENST00000272322 RPS6KB1P23443 525 aa19.77■□□□□ 0.76
VPS54-201ENST00000272322 NEK1Q96PY6 1258 aa19.77■□□□□ 0.76
VPS54-201ENST00000272322 RFX5P48382 616 aaPredicted RBP19.77■□□□□ 0.75
VPS54-201ENST00000272322 UBE2HP62256 183 aa19.77■□□□□ 0.75
VPS54-201ENST00000272322 COL15A1P39059 1388 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 HEG1Q9ULI3 1381 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 ADCY5O95622 1261 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 APOBRQ0VD83 1088 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 CCDC183Q5T5S1 534 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 ERCC4Q92889 916 aaPredicted RBP19.76■□□□□ 0.75
VPS54-201ENST00000272322 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.76■□□□□ 0.75
VPS54-201ENST00000272322 LRRC37A3O60309 1634 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 ATP6V1DQ9Y5K8 247 aa19.76■□□□□ 0.75
VPS54-201ENST00000272322 USP42Q9H9J4 1324 aaKnown RBP19.76■□□□□ 0.75
VPS54-201ENST00000272322 CADPS2Q86UW7 1296 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 BICD2Q8TD16 824 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 COPRSQ9NQ92 184 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 LRP10Q7Z4F1 713 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 FAM184AQ8NB25 1140 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 CWC25Q9NXE8 425 aaPredicted RBP19.75■□□□□ 0.75
VPS54-201ENST00000272322 ASAP1Q9ULH1 1129 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 HIP1O00291 1037 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 ADORA1P30542 326 aa19.75■□□□□ 0.75
VPS54-201ENST00000272322 ZSCAN31Q96LW9 406 aaPredicted RBP19.75■□□□□ 0.75
VPS54-201ENST00000272322 GOLGB1Q14789 3259 aaKnown RBP19.74■□□□□ 0.75
VPS54-201ENST00000272322 IFIT1P09914 478 aaKnown RBP19.74■□□□□ 0.75
VPS54-201ENST00000272322 OTUD7BQ6GQQ9 843 aa19.74■□□□□ 0.75
VPS54-201ENST00000272322 PLBD2Q8NHP8 589 aa19.74■□□□□ 0.75
VPS54-201ENST00000272322 SH2B1Q9NRF2 756 aaPredicted RBP19.74■□□□□ 0.75
VPS54-201ENST00000272322 PHF14O94880 888 aa19.74■□□□□ 0.75
VPS54-201ENST00000272322 FAM13BQ9NYF5 915 aa19.74■□□□□ 0.75
VPS54-201ENST00000272322 DACT1Q9NYF0 836 aa19.74■□□□□ 0.75
VPS54-201ENST00000272322 A0A1B0GUL7 405 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 STOX1Q6ZVD7 989 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 SPATA32Q96LK8 384 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 ATP5JP18859 108 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 KRT85P78386 507 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 TSC1Q92574 1164 aa19.73■□□□□ 0.75
VPS54-201ENST00000272322 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.73■□□□□ 0.75
VPS54-201ENST00000272322 SNAP23O00161 211 aa19.72■□□□□ 0.75
VPS54-201ENST00000272322 MCMDC2Q4G0Z9 681 aa19.72■□□□□ 0.75
VPS54-201ENST00000272322 DNAJC10Q8IXB1 793 aa19.72■□□□□ 0.75
VPS54-201ENST00000272322 PAG1Q9NWQ8 432 aa19.72■□□□□ 0.75
VPS54-201ENST00000272322 HELBQ8NG08 1087 aaPredicted RBP19.72■□□□□ 0.75
VPS54-201ENST00000272322 RGPD5Q99666 1765 aa19.72■□□□□ 0.75
VPS54-201ENST00000272322 CHD2O14647 1828 aaKnown RBP19.72■□□□□ 0.75
VPS54-201ENST00000272322 UTYO14607 1347 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 FOXO4P98177 505 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 CCDC57Q2TAC2 916 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 BRINP3Q76B58 766 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 PDLIM2Q96JY6 352 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 LUZP1Q86V48 1076 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 GJB4Q9NTQ9 266 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 NOL7Q9UMY1 257 aaKnown RBP19.71■□□□□ 0.75
VPS54-201ENST00000272322 ZKSCAN5Q9Y2L8 839 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 TM6SF1Q9BZW5 370 aa19.71■□□□□ 0.75
VPS54-201ENST00000272322 ATG9AQ7Z3C6 839 aa19.7■□□□□ 0.74
VPS54-201ENST00000272322 CACNA1FO60840 1977 aa19.7■□□□□ 0.74
VPS54-201ENST00000272322 CEP126Q9P2H0 1117 aa19.7■□□□□ 0.74
VPS54-201ENST00000272322 ZNF609O15014 1411 aa19.7■□□□□ 0.74
VPS54-201ENST00000272322 SCARF1Q14162 830 aa19.69■□□□□ 0.74
VPS54-201ENST00000272322 SCRN1Q12765 414 aa19.69■□□□□ 0.74
VPS54-201ENST00000272322 TBC1D2BQ9UPU7 963 aa19.69■□□□□ 0.74
VPS54-201ENST00000272322 SPATA31A3Q5VYP0 1347 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms