RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MAP4K1Q92918 833 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 BRF1Q92994 677 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 DNAJC25Q9H1X3 360 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 SLFNL1Q499Z3 407 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 TTC5Q8N0Z6 440 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 C16orf45Q96MC5 204 aaPredicted RBP14.96□□□□□ -0.01
LIG1-201ENST00000263274 EPB41L2O43491 1005 aaKnown RBP14.96□□□□□ -0.02
LIG1-201ENST00000263274 HMGN5P82970 282 aaKnown RBP14.96□□□□□ -0.02
LIG1-201ENST00000263274 CHST3Q7LGC8 479 aa14.96□□□□□ -0.02
LIG1-201ENST00000263274 A0A087WWV3 80 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 TFCP2Q12800 502 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 LRMPQ12912 555 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 ANKRD1Q15327 319 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 EPHA10Q5JZY3 1008 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 Q6ZUG5 572 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 GOLGA6L19H0YKK7 550 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 HOXB7P09629 217 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 RPS6KB1P23443 525 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 FAM200AQ8TCP9 573 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 NEK1Q96PY6 1258 aa14.95□□□□□ -0.02
LIG1-201ENST00000263274 MYRIPQ8NFW9 859 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 TM6SF1Q9BZW5 370 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 SCAND2PQ9GZW5 306 aaPredicted RBP14.94□□□□□ -0.02
LIG1-201ENST00000263274 NRBP1Q9UHY1 535 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 FER1L4A9Z1Z3 1794 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 SPDYE4A6NLX3 237 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 ZNF165P49910 485 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 DDX21Q9NR30 783 aaKnown RBP eCLIP14.94□□□□□ -0.02
LIG1-201ENST00000263274 A0A087WZG4 1122 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 BECN2A8MW95 431 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 ERCC4Q92889 916 aaPredicted RBP14.94□□□□□ -0.02
LIG1-201ENST00000263274 CCDC85AQ96PX6 553 aaPredicted RBP14.94□□□□□ -0.02
LIG1-201ENST00000263274 DBNDD2Q9BQY9 259 aa14.94□□□□□ -0.02
LIG1-201ENST00000263274 NR1I2O75469 434 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 KAZALD1Q96I82 304 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 IGKV5-2P06315 115 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 ANKRD13DQ6ZTN6 518 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 CBX8Q9HC52 389 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 AXIN2Q9Y2T1 843 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 RAB11FIP4Q86YS3 637 aa14.93□□□□□ -0.02
LIG1-201ENST00000263274 LEO1Q8WVC0 666 aaPredicted RBP14.93□□□□□ -0.02
LIG1-201ENST00000263274 FILIP1Q7Z7B0 1213 aa14.92□□□□□ -0.02
LIG1-201ENST00000263274 SMAP1Q8IYB5 467 aaPredicted RBP14.92□□□□□ -0.02
LIG1-201ENST00000263274 FTOQ9C0B1 505 aaKnown RBP eCLIP14.92□□□□□ -0.02
LIG1-201ENST00000263274 USP16Q9Y5T5 823 aa14.92□□□□□ -0.02
LIG1-201ENST00000263274 GOLIM4O00461 696 aa14.92□□□□□ -0.02
LIG1-201ENST00000263274 ZRSR1Q15695 479 aaKnown RBP14.92□□□□□ -0.02
LIG1-201ENST00000263274 MRVI1Q9Y6F6 885 aa14.92□□□□□ -0.02
LIG1-201ENST00000263274 MTX1Q13505 466 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 PPP4R3BQ5MIZ7 849 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 PRIMPOLQ96LW4 560 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 RIOK3O14730 519 aaKnown RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 TOB2Q14106 344 aaPredicted RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 ZNF790Q6PG37 636 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 ZNF496Q96IT1 587 aaPredicted RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 FMNL2Q96PY5 1086 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 NCOA5Q9HCD5 579 aaKnown RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 DBNLQ9UJU6 430 aaKnown RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 CEMIPQ8WUJ3 1361 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 RGPD8O14715 1765 aaPredicted RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 TIMM10P62072 90 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 GCKRQ14397 625 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 CHRNA2Q15822 529 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 TPD52L1Q16890 204 aaPredicted RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 GORABQ5T7V8 394 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 MTERF4Q7Z6M4 381 aaKnown RBP14.91□□□□□ -0.02
LIG1-201ENST00000263274 CABLES1Q8TDN4 633 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 KCNF1Q9H3M0 494 aa14.91□□□□□ -0.02
LIG1-201ENST00000263274 NEURL1BA8MQ27 555 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 TAF5LO75529 589 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 APOBRQ0VD83 1088 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 DDX17Q92841 729 aaKnown RBP14.9□□□□□ -0.02
LIG1-201ENST00000263274 ME1P48163 572 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 DIP2AQ14689 1571 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 LMBR1LQ6UX01 489 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 CLIP2Q9UDT6 1046 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 SF3A1Q15459 793 aaKnown RBP14.9□□□□□ -0.02
LIG1-201ENST00000263274 SNRKQ9NRH2 765 aa14.9□□□□□ -0.02
LIG1-201ENST00000263274 NPHP3Q7Z494 1330 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 KIAA1524Q8TCG1 905 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 FUCA2Q9BTY2 467 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 NPHP1O15259 732 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 FKBP4Q02790 459 aaKnown RBP eCLIP14.89□□□□□ -0.03
LIG1-201ENST00000263274 TNNI3KQ59H18 835 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 CCDC73Q6ZRK6 1079 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 SDF4Q9BRK5 362 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 BCL2L12Q9HB09 334 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 DDX19AQ9NUU7 478 aaKnown RBP14.89□□□□□ -0.03
LIG1-201ENST00000263274 FPGT-TNNI3KV9GXZ4 949 aa14.89□□□□□ -0.03
LIG1-201ENST00000263274 IGSF3O75054 1194 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 TATP17735 454 aaPredicted RBP14.88□□□□□ -0.03
LIG1-201ENST00000263274 HAND2P61296 217 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 KRT28Q7Z3Y7 464 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 KRT32Q14532 448 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 PDCL2Q8N4E4 241 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 TRMT1Q9NXH9 659 aaKnown RBP14.88□□□□□ -0.03
LIG1-201ENST00000263274 USP42Q9H9J4 1324 aaKnown RBP14.88□□□□□ -0.03
LIG1-201ENST00000263274 TULP1O00294 542 aaPredicted RBP14.88□□□□□ -0.03
LIG1-201ENST00000263274 TPM3P06753 285 aa14.88□□□□□ -0.03
LIG1-201ENST00000263274 CYP21A2P08686 494 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms