RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 SLC10A5Q5PT55 438 aa13.55□□□□□ -0.24
VPS50-201ENST00000251739 GPC2Q8N158 579 aa13.55□□□□□ -0.24
VPS50-201ENST00000251739 RPGRQ92834 1020 aaKnown RBP13.55□□□□□ -0.24
VPS50-201ENST00000251739 HACL1Q9UJ83 578 aa13.55□□□□□ -0.24
VPS50-201ENST00000251739 PCDHB8Q9UN66 801 aa13.55□□□□□ -0.24
VPS50-201ENST00000251739 DUOX1Q9NRD9 1551 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 THSD7BQ9C0I4 1608 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 GALR2O43603 387 aaPredicted RBP13.54□□□□□ -0.24
VPS50-201ENST00000251739 ANXA1P04083 346 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 GRIPAP1Q4V328 841 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 TRIM35Q9UPQ4 493 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 TRPM7Q96QT4 1865 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
VPS50-201ENST00000251739 CHL1O00533 1208 aa13.53□□□□□ -0.24
VPS50-201ENST00000251739 HSPA1AP0DMV8 641 aaKnown RBP13.53□□□□□ -0.24
VPS50-201ENST00000251739 HSPA1BP0DMV9 641 aaKnown RBP13.53□□□□□ -0.24
VPS50-201ENST00000251739 EPHX2P34913 555 aa13.53□□□□□ -0.24
VPS50-201ENST00000251739 PPP1R42Q7Z4L9 355 aa13.53□□□□□ -0.24
VPS50-201ENST00000251739 PPEF1O14829 653 aaPredicted RBP13.52□□□□□ -0.25
VPS50-201ENST00000251739 EIF2S2P20042 333 aaKnown RBP13.52□□□□□ -0.25
VPS50-201ENST00000251739 NLRP10Q86W26 655 aa13.52□□□□□ -0.25
VPS50-201ENST00000251739 RBM17Q96I25 401 aaKnown RBP13.52□□□□□ -0.25
VPS50-201ENST00000251739 ABCC4O15439 1325 aa13.52□□□□□ -0.25
VPS50-201ENST00000251739 COL4A1P02462 1669 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 SCNN1DP51172 638 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 KRT24Q2M2I5 525 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 PNMA8AQ86V59 439 aaPredicted RBP13.51□□□□□ -0.25
VPS50-201ENST00000251739 XAGE3Q8WTP9 111 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 JDP2Q8WYK2 163 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 UTP14AQ9BVJ6 771 aaKnown RBP13.51□□□□□ -0.25
VPS50-201ENST00000251739 DDX21Q9NR30 783 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS50-201ENST00000251739 ATP6V0A2Q9Y487 856 aa13.51□□□□□ -0.25
VPS50-201ENST00000251739 HOXB7P09629 217 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 DDX10Q13206 875 aaKnown RBP13.5□□□□□ -0.25
VPS50-201ENST00000251739 HSP90AB3PQ58FF7 597 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 COPS6Q7L5N1 327 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 CCDC146Q8IYE0 955 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 RUNDC1Q96C34 613 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 NLRP3Q96P20 1036 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 RTFDC1Q9BY42 306 aaPredicted RBP13.5□□□□□ -0.25
VPS50-201ENST00000251739 MKRN1Q9UHC7 482 aaKnown RBP13.5□□□□□ -0.25
VPS50-201ENST00000251739 TAOK2Q9UL54 1235 aa13.5□□□□□ -0.25
VPS50-201ENST00000251739 TCIRG1Q13488 830 aa13.49□□□□□ -0.25
VPS50-201ENST00000251739 EAPPQ56P03 285 aaPredicted RBP13.49□□□□□ -0.25
VPS50-201ENST00000251739 LARGE2Q8N3Y3 721 aa13.49□□□□□ -0.25
VPS50-201ENST00000251739 TMEM88BA6NKF7 163 aa13.48□□□□□ -0.25
VPS50-201ENST00000251739 EIF6P56537 245 aaKnown RBP13.48□□□□□ -0.25
VPS50-201ENST00000251739 MAP1SQ66K74 1059 aaPredicted RBP13.48□□□□□ -0.25
VPS50-201ENST00000251739 NECTIN2Q92692 538 aa13.48□□□□□ -0.25
VPS50-201ENST00000251739 VPS33BQ9H267 617 aa13.48□□□□□ -0.25
VPS50-201ENST00000251739 CHPF2Q9P2E5 772 aa13.48□□□□□ -0.25
VPS50-201ENST00000251739 SH3TC1Q8TE82 1336 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 RASSF10A6NK89 507 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 HCLS1P14317 486 aaPredicted RBP13.47□□□□□ -0.25
VPS50-201ENST00000251739 PDAP1Q13442 181 aaKnown RBP13.47□□□□□ -0.25
VPS50-201ENST00000251739 NEUROD2Q15784 382 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 CNTROBQ8N137 903 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 ADAMTS8Q9UP79 889 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 TRPC6Q9Y210 931 aa13.47□□□□□ -0.25
VPS50-201ENST00000251739 TCERG1O14776 1098 aaKnown RBP13.46□□□□□ -0.25
VPS50-201ENST00000251739 PPIP5K2O43314 1243 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 BBOX1O75936 387 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 ZNF853P0CG23 659 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 EPS15P42566 896 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 VEGFBP49765 207 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 AIMP1Q12904 312 aaKnown RBP13.46□□□□□ -0.25
VPS50-201ENST00000251739 WDR43Q15061 677 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS50-201ENST00000251739 AOC3Q16853 763 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 HDGFL1Q5TGJ6 251 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 SP8Q8IXZ3 490 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 NIM1KQ8IY84 436 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 TNS4Q8IZW8 715 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 CFAP44Q96MT7 982 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 ISCA1Q9BUE6 129 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 PRKRIP1Q9H875 184 aaPredicted RBP13.46□□□□□ -0.25
VPS50-201ENST00000251739 TRMT112Q9UI30 125 aaKnown RBP13.46□□□□□ -0.25
VPS50-201ENST00000251739 GJA3Q9Y6H8 435 aa13.46□□□□□ -0.25
VPS50-201ENST00000251739 CDHR2Q9BYE9 1310 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 KIAA2012Q0VF49 1180 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 GRAPQ13588 217 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 PLBD2Q8NHP8 589 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 GRAPLQ8TC17 118 aaPredicted RBP13.45□□□□□ -0.26
VPS50-201ENST00000251739 ZNRF3Q9ULT6 936 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 PSME4Q14997 1843 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 SCN9AQ15858 1988 aa13.45□□□□□ -0.26
VPS50-201ENST00000251739 FOXN1O15353 648 aa13.44□□□□□ -0.26
VPS50-201ENST00000251739 LMOD1P29536 600 aaPredicted RBP13.44□□□□□ -0.26
VPS50-201ENST00000251739 CXCL9Q07325 125 aa13.44□□□□□ -0.26
VPS50-201ENST00000251739 USP50Q70EL3 339 aaPredicted RBP13.44□□□□□ -0.26
VPS50-201ENST00000251739 SUPT20HQ8NEM7 779 aa13.44□□□□□ -0.26
VPS50-201ENST00000251739 MBIPQ9NS73 344 aa13.44□□□□□ -0.26
VPS50-201ENST00000251739 GPRC5DQ9NZD1 345 aa13.44□□□□□ -0.26
VPS50-201ENST00000251739 DBF4Q9UBU7 674 aaPredicted RBP13.44□□□□□ -0.26
VPS50-201ENST00000251739 TIE1P35590 1138 aa13.43□□□□□ -0.26
VPS50-201ENST00000251739 PSEN1P49768 467 aa13.43□□□□□ -0.26
VPS50-201ENST00000251739 TRIM28Q13263 835 aaKnown RBP13.43□□□□□ -0.26
VPS50-201ENST00000251739 SF3B3Q15393 1217 aaKnown RBP13.43□□□□□ -0.26
VPS50-201ENST00000251739 DUSP27Q5VZP5 1158 aa13.43□□□□□ -0.26
VPS50-201ENST00000251739 DPP8Q6V1X1 898 aaPredicted RBP13.43□□□□□ -0.26
VPS50-201ENST00000251739 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms