RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	BOK	Q9UMX3	212 aa	Predicted RBP	10.65	□□□□□ -0.7
CLN6-223	ENST00000637823	RNF6	Q9Y252	685 aa		10.65	□□□□□ -0.7
CLN6-223	ENST00000637823	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.65	□□□□□ -0.7
CLN6-223	ENST00000637823	SPIN1	Q9Y657	262 aa	Predicted RBP	10.65	□□□□□ -0.7
CLN6-223	ENST00000637823		A0A0G2JMM0	328 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823		A0A1W2PPB8	328 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823		A0A1W2PRS3	328 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	ZC3H12D	A2A288	527 aa	Known RBP	10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	KIR3DP1	A8MWS1	328 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	KLRC4-KLRK1	H3BQV0	150 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	EFNA2	O43921	213 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	NME2P1	O60361	137 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	AHSA1	O95433	338 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	NME2	P22392	152 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	SRD5A2	P31213	254 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	RPS5	P46782	204 aa	Known RBP	10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	ID4	P47928	161 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	FXYD6P3	P58550	94 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	PRPS1	P60891	318 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	CXCR4	P61073	352 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	SNRPG	P62308	76 aa	Known RBP	10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	ARG2	P78540	354 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	TEK	Q02763	1124 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	LTB	Q06643	244 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	FHL1	Q13642	323 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	TMEM44	Q2T9K0	475 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	FAM69A	Q5T7M9	428 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	CCDC81	Q6ZN84	652 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	MAMDC2	Q7Z304	686 aa	Predicted RBP	10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	SULF2	Q8IWU5	870 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	LRRC17	Q8N6Y2	441 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	FDCSP	Q8NFU4	85 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	OR2T33	Q8NG76	320 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	OR2M7	Q8NG81	312 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	OR8J1	Q8NGP2	316 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	C5orf34	Q96MH7	638 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	MOGAT1	Q96PD6	335 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC38A2	Q96QD8	506 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	NPAS1	Q99742	590 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	POLDIP3	Q9BY77	421 aa	Known RBP	10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	PRRG3	Q9BZD7	231 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	ENKD1	Q9H0I2	346 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.64	□□□□□ -0.71	2e-6	■■■□□ 15
CLN6-223	ENST00000637823	UBQLN3	Q9H347	655 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	ZNF696	Q9H7X3	374 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	RASSF1	Q9NS23	344 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	TVP23B	Q9NYZ1	205 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	BAIAP2	Q9UQB8	552 aa		10.64	□□□□□ -0.71
CLN6-223	ENST00000637823	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	KIAA1549	Q9HCM3	1950 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	URB1	O60287	2271 aa	Known RBP	10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	TRAV27	A0A087WT01	109 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	LRRC3C	A6NJW4	275 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SHISA8	B8ZZ34	492 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	RRP8	O43159	456 aa	Known RBP	10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	NDUFB2	O95178	105 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	TSPAN19	P0C672	248 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	ASAH2B	P0C7U1	165 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	TFPI	P10646	304 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	ZNF17	P17021	662 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	GABRB1	P18505	474 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	ELK4	P28324	431 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC6A6	P31641	620 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	GRK5	P34947	590 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	EIF2S3	P41091	472 aa	Known RBP	10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	GPR85	P60893	370 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	EFNB1	P98172	346 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	FOXO1	Q12778	655 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SELENBP1	Q13228	472 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	MFSD13A	Q14CX5	517 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SNAPC1	Q16533	368 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	PGGHG	Q32M88	737 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	KCTD21	Q4G0X4	260 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	CLEC12A	Q5QGZ9	265 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC25A30	Q5SVS4	291 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	C1QL3	Q5VWW1	255 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	LAIR2	Q6ISS4	152 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	C3orf33	Q6P1S2	294 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	LNX2	Q8N448	690 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	FAM26E	Q8N5C1	309 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	IQCF1	Q8N6M8	205 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	OR4Q3	Q8NH05	313 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	MFSD8	Q8NHS3	518 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	CNIH3	Q8TBE1	160 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC25A43	Q8WUT9	341 aa	Predicted RBP	10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	ZNF566	Q969W8	418 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823		Q96MT0	163 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	PIGQ	Q9BRB3	760 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	PTDSS2	Q9BVG9	487 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	IFT27	Q9BW83	186 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	OR11A1	Q9GZK7	315 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	NDEL1	Q9GZM8	345 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	ADNP	Q9H2P0	1102 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	MCCC2	Q9HCC0	563 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	CLN6	Q9NWW5	311 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	HIF3A	Q9Y2N7	669 aa		10.63	□□□□□ -0.71
CLN6-223	ENST00000637823	SH3D21	A4FU49	640 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	PINLYP	A6NC86	204 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TRIM64	A6NGJ6	449 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	LRRN3	E7EW58	273 aa		10.62	□□□□□ -0.71

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