RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MPDZO75970 2070 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 CPAMD8Q8IZJ3 1885 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 TRAV36DV7A0A075B6V5 113 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 NPIPB7O75200 414 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 BGLAPP02818 100 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 GP2P55259 537 aaKnown RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 FOXF1Q12946 379 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 IRF3Q14653 427 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 CXXC5Q7LFL8 322 aaKnown RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 CPOQ8IVL8 374 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 BBS1Q8NFJ9 593 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 MOSPD2Q8NHP6 518 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 PAQR8Q8TEZ7 354 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 ADAMTS14Q8WXS8 1223 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 PSMF1Q92530 271 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 DNAJA3Q96EY1 480 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 THOC3Q96J01 351 aaKnown RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 TAPBPLQ9BX59 468 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 GPN2Q9H9Y4 310 aaPredicted RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 CMC2Q9NRP2 79 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 TAS2R16Q9NYV7 291 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 FBXL2Q9UKC9 423 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 HIF3AQ9Y2N7 669 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 COMMD3-BMI1R4GMX3 469 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 PTPRBP23467 1997 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 FAM183AA6NL82 134 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 A8MVM7 634 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 BLOC1S5-TXNDC5H3BN57 136 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 ETV2O00321 342 aaPredicted RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 LCKP06239 509 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 PEPDP12955 493 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 RPL4P36578 427 aaKnown RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 TUBA3CQ13748 450 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 TGIF1Q15583 401 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 TBCEQ15813 527 aaPredicted RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 ACER2Q5QJU3 275 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 GPR107Q5VW38 600 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 NXNL2Q5VZ03 156 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 GALNT15Q8N3T1 639 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 FADS6Q8N9I5 356 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 RNFT2Q96EX2 444 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 ERMAPQ96PL5 475 aaPredicted RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 PTDSS2Q9BVG9 487 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 ANGPTL4Q9BY76 406 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 OR11A1Q9GZK7 315 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 FN3KQ9H479 309 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 FKRPQ9H9S5 495 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 PROK2Q9HC23 129 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 RYDENQ9NUL5 291 aaKnown RBP15.28■□□□□ 0.04
CLN3-252ENST00000636907 CHRNA9Q9UGM1 479 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 ZNF229Q9UJW7 825 aa15.28■□□□□ 0.04
CLN3-252ENST00000636907 SNTNA6NMZ2 147 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 SHISA8B8ZZ34 492 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 NOS3P29474 1203 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 AQP2P41181 271 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 APOBEC1P41238 236 aaKnown RBP15.27■□□□□ 0.03
CLN3-252ENST00000636907 ZNF41P51814 821 aaPredicted RBP15.27■□□□□ 0.03
CLN3-252ENST00000636907 CDH11P55287 796 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 PRPS1P60891 318 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 TMEM44Q2T9K0 475 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 PLPPR5Q32ZL2 321 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 DCAF10Q5QP82 559 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 ZNF362Q5T0B9 420 aaPredicted RBP15.27■□□□□ 0.03
CLN3-252ENST00000636907 SYT6Q5T7P8 510 aaPredicted RBP15.27■□□□□ 0.03
CLN3-252ENST00000636907 C1orf140Q5VVS0 124 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 UBE2UQ5VVX9 321 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 SLC22A10Q63ZE4 541 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 PLBD1Q6P4A8 553 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 ARHGAP11AQ6P4F7 1023 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 DPY19L2P2Q6ZN68 376 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 TMPRSS7Q7RTY8 843 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 OR4K17Q8NGC6 315 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 STK35Q8TDR2 534 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 OTULINQ96BN8 352 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 NTNG2Q96CW9 530 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 LGALS12Q96DT0 336 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 TMEM80Q96HE8 168 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 CDCA4Q9BXL8 241 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 MED20Q9H944 212 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 ANKRD10Q9NXR5 420 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 RSL24D1Q9UHA3 163 aaKnown RBP15.27■□□□□ 0.03
CLN3-252ENST00000636907 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.27■□□□□ 0.03
CLN3-252ENST00000636907 ADAM18Q9Y3Q7 739 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 IER3IP1Q9Y5U9 82 aa15.27■□□□□ 0.03
CLN3-252ENST00000636907 RIIAD1A6NNX1 92 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 PTHP01270 115 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 HK1P19367 917 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 UQCRC1P31930 480 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 MTNR1AP48039 350 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 SLC25A53Q5H9E4 307 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 MDGA2Q7Z553 956 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 NANOGNBQ7Z5D8 188 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 LRRC75AQ8NAA5 344 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 OR52I1Q8NGK6 324 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 POC1BQ8TC44 478 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 RFKQ969G6 155 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 RELTQ969Z4 430 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 NMD3Q96D46 503 aaKnown RBP15.26■□□□□ 0.03
CLN3-252ENST00000636907 MRGPRX4Q96LA9 322 aa15.26■□□□□ 0.03
CLN3-252ENST00000636907 SGCZQ96LD1 299 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms