RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF337Q9Y3M9 751 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF823P16415 610 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 ENDOUP21128 410 aaKnown RBP14.38□□□□□ -0.11
CPSF1-213ENST00000620219 DRD5P21918 477 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 SLC26A5P58743 744 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 CEBPEQ15744 281 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 OPN5Q6U736 354 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 KIF18BQ86Y91 864 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF615Q8N8J6 731 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 OR10G3Q8NGC4 313 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 OR14L1PQ8NHC6 308 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 CDC6Q99741 560 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 GPN2Q9H9Y4 310 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-213ENST00000620219 SLC22A31A6NKX4 558 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 MAGEB3O15480 346 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 HOXA6P31267 233 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 RGS6P49758 472 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF117Q03924 483 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 SRYQ05066 204 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 C22orf42Q6IC83 251 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 LSM14AQ8ND56 463 aaKnown RBP14.38□□□□□ -0.11
CPSF1-213ENST00000620219 NXPE2Q96DL1 559 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 ANKRD19PQ9H560 264 aa14.38□□□□□ -0.11
CPSF1-213ENST00000620219 FARSAQ9Y285 508 aaKnown RBP14.38□□□□□ -0.11
CPSF1-213ENST00000620219 SAGE2PA6NJ88 616 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF726A6NNF4 738 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CDRT1O95170 752 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CLUP10909 449 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 JUNBP17275 347 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-213ENST00000620219 PCMT1P22061 227 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF136P52737 540 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 RHAGQ02094 409 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TRIP6Q15654 476 aaKnown RBP14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TMEM176BQ3YBM2 270 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-213ENST00000620219 KLK4Q9Y5K2 254 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 SPARCP09486 303 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 PNLIPP16233 465 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 SLC1A3P43003 542 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 SSR4P51571 173 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TBCEQ15813 527 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF770Q6IQ21 691 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-213ENST00000620219 SLC37A3Q8NCC5 494 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF721Q8TF20 911 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 NSMAFQ92636 917 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TSSK2Q96PF2 358 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 WDFY4Q6ZS81 3184 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CLDN25C9JDP6 229 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 LRRTM2O43300 516 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 DDAH2O95865 285 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 RFC3P40938 356 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 GFOD2Q3B7J2 385 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TP53I3Q53FA7 332 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 PLEKHG7Q6ZR37 379 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ANKRD13BQ86YJ7 626 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 PSD4Q8NDX1 1056 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF671Q8TAW3 534 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 BORCS5Q969J3 196 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 TM9SF2Q99805 663 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 MALT1Q9UDY8 824 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 KIF26BQ2KJY2 2108 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CD8B2A6NJW9 211 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CD8BP10966 210 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 S1PR1P21453 382 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 EDNRAP25101 427 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 OMPP47874 163 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 PRPS1P60891 318 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 ALKBH2Q6NS38 261 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 CMIPQ8IY22 773 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 YIPF7Q8N8F6 280 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 GPR119Q8TDV5 335 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 POLE4Q9NR33 117 aa14.37□□□□□ -0.11
CPSF1-213ENST00000620219 USP34Q70CQ2 3546 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 A0A0B4J2E0 115 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 A0A1B0GX12 115 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 FITM1A5D6W6 292 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 PNLIPRP2P54317 469 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 MELKQ14680 651 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 CARTPTQ16568 116 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 SYT6Q5T7P8 510 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 THSD4Q6ZMP0 1018 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF367Q7RTV3 350 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 FAM181AQ8N9Y4 354 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 OR4Q3Q8NH05 313 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 OR5W2Q8NH69 310 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 STMN3Q9NZ72 180 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 YARS2Q9Y2Z4 477 aaKnown RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 EXOSC1Q9Y3B2 195 aaKnown RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 TBX1O43435 398 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 DPM1O60762 260 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 HNRNPCP07910 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 CHAF1BQ13112 559 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 TRA2AQ13595 282 aaKnown RBP eCLIP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 UTS2BQ765I0 119 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 OR6N1Q8NGY5 312 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF566Q969W8 418 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 THOC3Q96J01 351 aaKnown RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 COMMD3Q9UBI1 195 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 HCCSP53701 268 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 POU3F1Q03052 451 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF511Q8NB15 262 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms