RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 EVI2BP34910 448 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 RPS4XP62701 263 aaKnown RBP15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 ZNF404Q494X3 552 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 ARHGAP11AQ6P4F7 1023 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 CROCCP3Q8IVE0 287 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 ZFP41Q8N8Y5 198 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 TMEM203Q969S6 136 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 CCNL2Q96S94 520 aaPredicted RBP15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 TMEM43Q9BTV4 400 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 STUB1Q9UNE7 303 aa15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 PPIEQ9UNP9 301 aaKnown RBP15.53■□□□□ 0.08
SHKBP1-216ENST00000598201 TMEM200CA6NKL6 621 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 CLDN25C9JDP6 229 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 TSPAN19P0C672 248 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 BMP4P12644 408 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 ZNF3P17036 446 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 ITPKBP27987 946 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 LTBQ06643 244 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 IL11RAQ14626 422 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 ZNF74Q16587 644 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 CLPPQ16740 277 aaPredicted RBP15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 MRPL14Q6P1L8 145 aaKnown RBP15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 FAM199XQ6PEV8 388 aaPredicted RBP15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 LINC00299Q6ZSB3 139 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 SLC43A2Q8N370 569 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 MFSD4AQ8N468 514 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 PSD4Q8NDX1 1056 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 DEFB124Q8NES8 71 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 SDR9C7Q8NEX9 313 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 OR52E2Q8NGJ4 325 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 OR4K13Q8NH42 304 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 MOSPD2Q8NHP6 518 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 TP53INP1Q96A56 240 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 CRB3Q9BUF7 120 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 JAM3Q9BX67 310 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 SLC26A1Q9H2B4 701 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 NPFFR2Q9Y5X5 522 aa15.52■□□□□ 0.08
SHKBP1-216ENST00000598201 PAICSP22234 425 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 RPL4P36578 427 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 SLC6A8P48029 635 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 SLC16A1P53985 500 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 RPS7P62081 194 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 TPBGQ13641 420 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 TRIP6Q15654 476 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 CPEB2Q7Z5Q1 589 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 AGBL5Q8NDL9 886 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 OR9Q1Q8NGQ5 310 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 KTI12Q96EK9 354 aaPredicted RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 TBX5Q99593 518 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 TIMP4Q99727 224 aa15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 CCDC59Q9P031 241 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 SF3B6Q9Y3B4 125 aaKnown RBP15.52■□□□□ 0.07
SHKBP1-216ENST00000598201 PCNX3Q9H6A9 2034 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 TRBV11-1A0A0K0K1C0 115 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 OR6C70A6NIJ9 312 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 C12orf71A8MTZ7 269 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 EIF4E2O60573 245 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 CPNE3O75131 537 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 MRPL3P09001 348 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 ACP1P24666 158 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 FBXW4P57775 412 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 RPS25P62851 125 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 RSPO4Q2I0M5 234 aaPredicted RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 C10orf53Q8N6V4 93 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 SMAP2Q8WU79 429 aaPredicted RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 SPRYD4Q8WW59 207 aaPredicted RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 NXF2Q9GZY0 626 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 ISG20L2Q9H9L3 353 aaKnown RBP15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 MMP25Q9NPA2 562 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 ISYNA1Q9NPH2 558 aa15.51■□□□□ 0.07
SHKBP1-216ENST00000598201 SLC22A31A6NKX4 558 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 IMPA2O14732 288 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 PLD2O14939 933 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 NUDT14O95848 222 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 IGF2P01344 180 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 IFNGP01579 166 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 CSRP1P21291 193 aaKnown RBP15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 AQP2P41181 271 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 NRG3P56975 720 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 ERVK-25P63136 954 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 TRA2AQ13595 282 aaKnown RBP eCLIP15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 ZNF846Q147U1 533 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 C16orf87Q6PH81 154 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 POMZP3Q6PJE2 187 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 ZNF322Q6U7Q0 402 aaPredicted RBP15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 TMEM205Q6UW68 189 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 DPY19L2P2Q6ZN68 376 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 GDPGP1Q6ZNW5 385 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 BPHLQ86WA6 291 aaPredicted RBP15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 KLHL36Q8N4N3 616 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 ACBD7Q8N6N7 88 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 FAM98AQ8NCA5 519 aaKnown RBP15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 OR5W2Q8NH69 310 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 LPAR4Q99677 370 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 ASPNQ9BXN1 380 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 MMP27Q9H306 513 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 RERGLQ9H628 205 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 HMG20AQ9NP66 347 aa15.5■□□□□ 0.07
SHKBP1-216ENST00000598201 NRIP3Q9NQ35 241 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms