RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NXNQ6DKJ4 435 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 ZNF621Q6ZSS3 439 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 UBE2J2Q8N2K1 259 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 ANKFN1Q8N957 763 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 OR9I1Q8NGQ6 314 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 OR52N5Q8NH56 324 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 FAM168AQ92567 244 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 APH1AQ96BI3 265 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 ZHX1-C8orf76Q96EF9 292 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 PANX1Q96RD7 426 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 SLC38A1Q9H2H9 487 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 SLCO1B3Q9NPD5 702 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 POLE3Q9NRF9 147 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 SDR39U1Q9NRG7 319 aaPredicted RBP11□□□□□ -0.65
TRIM28-212ENST00000597995 ASB6Q9NWX5 421 aa11□□□□□ -0.65
TRIM28-212ENST00000597995 NOSIPQ9Y314 301 aaKnown RBP11□□□□□ -0.65
TRIM28-212ENST00000597995 HEATR1Q9H583 2144 aaKnown RBP11□□□□□ -0.65
TRIM28-212ENST00000597995 CCT8L1PA6NM43 557 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 SLC22A3O75751 556 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 CYP7B1O75881 506 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 PMS2P2O95744 297 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 AGR2O95994 175 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 UBTFL6P0CB48 400 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 IDO1P14902 403 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 APOBEC1P41238 236 aaKnown RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 CLK1P49759 484 aaKnown RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 EFNA4P52798 201 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 SLC16A1P53985 500 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 CHRNB3Q05901 458 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 GABRA6Q16445 453 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 GTDC1Q4AE62 458 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 ATAD3BQ5T9A4 648 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 EPGNQ6UW88 154 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 EIF3MQ7L2H7 374 aaKnown RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 ZNF525Q8N782 197 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 GLB1L3Q8NCI6 653 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 PIGXQ8TBF5 258 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 PNPT1Q8TCS8 783 aaKnown RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 C10orf105Q8TEF2 133 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 AMBRA1Q9C0C7 1298 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 SHARPINQ9H0F6 387 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 ZIM2Q9NZV7 527 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 MALT1Q9UDY8 824 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 HDGFL3Q9Y3E1 203 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 SPIN1Q9Y657 262 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-212ENST00000597995 USH1CQ9Y6N9 552 aa10.99□□□□□ -0.65
TRIM28-212ENST00000597995 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.98□□□□□ -0.657e-14■■■■■ 38.1
TRIM28-212ENST00000597995 MRPL33O75394 65 aaKnown RBP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 IGHV3-9P01782 118 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 IL6P05231 212 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 IGHV4-31P0DP07 118 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 TFPIP10646 304 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 RPS4Y1P22090 263 aaKnown RBP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 USF1P22415 310 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 NTF4P34130 210 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 KCNJ10P78508 379 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 LSM11P83369 360 aaKnown RBP eCLIP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 GSTA3Q16772 222 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 GPAT3Q53EU6 434 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 B3GLCTQ6Y288 498 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 C17orf78Q8N4C9 275 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 CNOT9Q92600 299 aaKnown RBP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 VPS33AQ96AX1 596 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 ATP6V1G3Q96LB4 118 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 C7orf26Q96N11 449 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 TRNT1Q96Q11 434 aaKnown RBP10.98□□□□□ -0.65
TRIM28-212ENST00000597995 ZBTB18Q99592 522 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 EBF4Q9BQW3 602 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 CCDC106Q9BWC9 280 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 FKRPQ9H9S5 495 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 CHRNA9Q9UGM1 479 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 SLC35A3Q9Y2D2 325 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 PMF1-BGLAPU3KQ54 211 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 NBEAL1Q6ZS30 2694 aa10.98□□□□□ -0.65
TRIM28-212ENST00000597995 AGAP5A6NIR3 686 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 M0R1B8 84 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 PDLIM1O00151 329 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 RFXANKO14593 260 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 AP3D1O14617 1153 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 UBDO15205 165 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 LMX1BO60663 402 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 ZCCHC18P0CG32 403 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 HOXB9P17482 250 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-212ENST00000597995 APOBEC3AP31941 199 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-212ENST00000597995 MAGEA8P43361 318 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 GZMKP49863 264 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 H3F3AP84243 136 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 SPOCK1Q08629 439 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 LRRC74AQ0VAA2 488 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 KRTAP24-1Q3LI83 254 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 LRRC74BQ6ZQY2 392 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 GRINAQ7Z429 371 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 FUNDC1Q8IVP5 155 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 TRIML2Q8N7C3 387 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 WDR31Q8NA23 367 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 C1orf162Q8NEQ5 155 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-212ENST00000597995 AURKBQ96GD4 344 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-212ENST00000597995 CTPS2Q9NRF8 586 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-212ENST00000597995 PARPBPQ9NWS1 579 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms