RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 BCDIN3DQ7Z5W3 292 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 CDH26Q8IXH8 852 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 KLHDC8AQ8IYD2 350 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 TCEANCQ8N8B7 351 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 L3MBTL4Q8NA19 623 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SLC38A9Q8NBW4 561 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 OR4D10Q8NGI6 311 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 OR2L8Q8NGY9 312 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NEIL3Q8TAT5 605 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GEMIN6Q8WXD5 167 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 GATAD2BQ8WXI9 593 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF501Q96CX3 271 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 APIPQ96GX9 242 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 MS4A3Q96HJ5 214 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 UBL7Q96S82 380 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 SGPP1Q9BX95 441 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 DPH1Q9BZG8 443 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 ULBP3Q9BZM4 244 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 METTL17Q9H7H0 456 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NDRG3Q9UGV2 375 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 NDOR1Q9UHB4 597 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PURGQ9UJV8 347 aaKnown RBP7.06□□□□□ -1.28
LIMA1-216ENST00000552909 PLCL2Q9UPR0 1127 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 MGAT4BQ9UQ53 548 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 DYRK1BQ9Y463 629 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 FER1L5A0AVI2 2057 aa7.06□□□□□ -1.28
LIMA1-216ENST00000552909 KCNE1BA0A087WTH5 132 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM129A0AVI4 362 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PRAMEF25A6NGN4 478 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FAM74A7A6NL05 159 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 POM121CA8CG34 1229 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PRMT3O60678 531 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SOX14O95416 240 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 S100A6P06703 90 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 H2AFB2P0C5Z0 115 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CD22P20273 847 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RAG2P55895 527 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ZP1P60852 638 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 KIR2DS3Q14952 304 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ARHGAP19Q14CB8 494 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SF1Q15637 639 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FAM74A3Q4VXF1 159 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ARHGAP40Q5TG30 622 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 OR2G6Q5TZ20 316 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 NOXRED1Q6NXP6 359 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SLCO4C1Q6ZQN7 724 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 LRRC28Q86X40 367 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PPP1R3BQ86XI6 285 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 KMT5CQ86Y97 462 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RAB42Q8N4Z0 105 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 EIF4E3Q8N5X7 224 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 BEST4Q8NFU0 473 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 OR8J2Q8NGG1 315 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 OR5M3Q8NGP4 307 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 OR2A1Q8NGT9 310 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 OR1L3Q8NH93 324 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SCARB1Q8WTV0 552 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SLC5A11Q8WWX8 675 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 HSD17B8Q92506 261 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ELMOD3Q96FG2 381 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 FCRL1Q96LA6 429 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TEFMQ96QE5 360 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 DDOQ99489 341 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SARGQ9BW04 601 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 EBPLQ9BY08 206 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PDE7BQ9NP56 450 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ING1Q9UK53 422 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RARRES3Q9UL19 164 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SH2B3Q9UQQ2 575 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SLC9A8Q9Y2E8 581 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 KCNK7Q9Y2U2 307 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CCDC88CQ9P219 2028 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 MDC1Q14676 2089 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TLN1Q9Y490 2541 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TRAV20A0A0B4J274 112 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 A0A0J9YY10 115 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 LOC101059948A0A1B0GTJ6 334 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 LINC00587B1AMM8 73 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM150CB9EJG8 249 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PCDH7O60245 1069 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 RAD1O60671 282 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 KDM4BO94953 1096 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 HLA-DPB1P04440 258 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ALDOBP05062 364 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 C1GALT1C1LP0DN25 315 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 GAAP10253 952 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 TFPIP10646 304 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ERGP11308 486 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 DRD2P14416 443 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 ACPPP15309 386 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 GIFP27352 417 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CHI3L1P36222 383 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CRATP43155 626 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 GABRA4P48169 554 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 PITPNBP48739 271 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SRP9P49458 86 aaKnown RBP7.05□□□□□ -1.28
LIMA1-216ENST00000552909 SELENOPP49908 381 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 XKP51811 444 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 CXADRP78310 365 aa7.05□□□□□ -1.28
LIMA1-216ENST00000552909 DEFA5Q01523 94 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms