RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CSF2RBP32927 897 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CNR2P34972 360 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 GPR12P47775 334 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 EFNA3P52797 238 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 ATP5IP56385 69 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 RHOAP61586 193 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 EXOSC6Q5RKV6 272 aaKnown RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 SDHAF4Q5VUM1 108 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 REEP3Q6NUK4 255 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 OVCH1Q7RTY7 1134 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 PROSER1Q86XN7 944 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 S100A13Q99584 98 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 MED28Q9H204 178 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 PCIF1Q9H4Z3 704 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 NSUN3Q9H649 340 aaKnown RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CACYBPQ9HB71 228 aaKnown RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 AGPAT4Q9NRZ5 378 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 PAK1IP1Q9NWT1 392 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 RAP2CQ9Y3L5 183 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 A0A1W2PPE3 182 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 ELOVL7A1L3X0 281 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 C19orf67A6NJJ6 358 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 FAM159BA6NKW6 160 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 PDYNP01213 254 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CA3P07451 260 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 IL1RNP18510 177 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CD58P19256 250 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 DPY19L1Q2PZI1 675 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 ZNF766Q5HY98 468 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 TAPT1Q6NXT6 567 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 OR6V1Q8N148 313 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 NKD1Q969G9 470 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 RERGQ96A58 199 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 C4orf36Q96KX1 117 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 UBE2ZQ9H832 354 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 POPDC2Q9HBU9 364 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 G6PC2Q9NQR9 355 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 FAM49BQ9NUQ9 324 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 FBXL12Q9NXK8 326 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CGGBP1Q9UFW8 167 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-212ENST00000543766 TNFRSF18Q9Y5U5 241 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 CENPFP49454 3210 aa8.24□□□□□ -1.09
VPS13D-212ENST00000543766 TRAV19A0A0A6YYK7 116 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SMCO3A2RU48 225 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 ANKRD66B4E2M5 251 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 AIPO00170 330 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RAMP3O60896 148 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RGS11O94810 467 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RAB40ALP0C0E4 278 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CD68P34810 354 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CDKN2BP42772 138 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SESN2P58004 480 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 ST8SIA6P61647 398 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RPL23AP62750 156 aaKnown RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SEMA3BQ13214 749 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 FAM219AQ8IW50 185 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 BEST4Q8NFU0 473 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 TEPSINQ96N21 525 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 STRADBQ9C0K7 418 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 ABCG5Q9H222 651 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CPVLQ9H3G5 476 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SLC28A3Q9HAS3 691 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SPG21Q9NZD8 308 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 ORC6Q9Y5N6 252 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 MYL12BO14950 172 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RP2O75695 350 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CLDN9O95484 217 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 EFEMP2O95967 443 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CFDP00746 253 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 MMP7P09237 267 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 IRF2P14316 349 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 MYL12AP19105 171 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 GMPRP36959 345 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SLC37A1P57057 533 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 RAP1AP62834 184 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SRSF2Q01130 221 aaKnown RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 KIAA0141Q14154 515 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 ASPRV1Q53RT3 343 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 GDF6Q6KF10 455 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 GAREM2Q75VX8 874 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 TMEM135Q86UB9 458 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 VRK3Q8IV63 474 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 BCORP1Q8N888 145 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 BVESQ8NE79 360 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 DBF4BQ8NFT6 615 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 WNT2BQ93097 391 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 MSI2Q96DH6 328 aaKnown RBP8.23□□□□□ -1.09
VPS13D-212ENST00000543766 COQ4Q9Y3A0 265 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 UFC1Q9Y3C8 167 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 TCRBV5S1A1TA0A578 114 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CHRM2P08172 466 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 OR10J4P0C629 311 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 SLC2A5P22732 501 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CDK8P49336 464 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 CLCN3P51790 818 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 NCS1P62166 190 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 TREML2Q5T2D2 321 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 STEAP2Q8NFT2 490 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 OR2Z1Q8NG97 314 aa8.23□□□□□ -1.09
VPS13D-212ENST00000543766 LYPD6BQ8NI32 183 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms