RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TP53I3Q53FA7 332 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 BCL2L15Q5TBC7 163 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 FAM205BPQ63HN1 556 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LYPD8Q6UX82 237 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LINC00114Q6XXX2 140 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SYT9Q86SS6 491 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LINC00469Q8N7U9 141 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR4D9Q8NGE8 314 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HAVCR2Q8TDQ0 301 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 YIPF5Q969M3 257 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RERGQ96A58 199 aaPredicted RBP14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SCMH1Q96GD3 660 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GHITMQ9H3K2 345 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZCCHC4Q9H5U6 513 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CCDC86Q9H6F5 360 aaKnown RBP14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 KLHL1Q9NR64 748 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC2A4RGQ9NR83 387 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 DNAJB12Q9NXW2 375 aaKnown RBP14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ICAM5Q9UMF0 924 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 NCKAP1Q9Y2A7 1128 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LRP4O75096 1905 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A0B4J203 849 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TRAV1-2A0A0B4J238 106 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 C7orf66A4D0T2 115 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HOXB2P14652 356 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ATF1P18846 271 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 S1PR1P21453 382 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SLC6A6P31641 620 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PSG6Q00889 435 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CCINQ13939 588 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TMEM92Q6UXU6 159 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RNF44Q7L0R7 432 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SFTPA2Q8IWL1 248 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 GHDCQ8N2G8 530 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 MS4A15Q8N5U1 240 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SNAPC3Q92966 411 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZMYND19Q96E35 227 aaPredicted RBP14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CAPN10Q9HC96 672 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 STARD5Q9NSY2 213 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 CHRNA9Q9UGM1 479 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SPACA6W5XKT8 324 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ABCA7Q8IZY2 2146 aa14.78□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPK0 400 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HCRTR1O43613 425 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SNRPBP14678 240 aaKnown RBP14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RBM34P42696 430 aaKnown RBP14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 RPS11P62280 158 aaKnown RBP eCLIP14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 POU4F2Q12837 409 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ALG11Q2TAA5 492 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 HACD4Q5VWC8 232 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ARHGAP11AQ6P4F7 1023 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ZNF614Q8N883 585 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 SDR9C7Q8NEX9 313 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR4N2Q8NGD1 307 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 OR52E2Q8NGJ4 325 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 PELI1Q96FA3 418 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 ERMAPQ96PL5 475 aaPredicted RBP14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 LMAN1LQ9HAT1 526 aa14.77□□□□□ -0.04
MSH5-SAPCD1-208ENST00000498473 TRAV6A0A075B6T7 132 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HIST1H1CP16403 213 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CAPZA2P47755 286 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SRP54P61011 504 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CRYZQ08257 329 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MRPL28Q13084 256 aaKnown RBP14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 KRT74Q7RTS7 529 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 C9orf62Q8N4C0 152 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR4K13Q8NH42 304 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNRF4Q8WWF5 429 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OMA1Q96E52 524 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SIPA1Q96FS4 1042 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLCO1C1Q9NYB5 712 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HSPB11Q9Y547 144 aa14.77□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FABP7O15540 132 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 IFNGP01579 166 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CTSBP07858 339 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CD3GP09693 182 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 EPXP11678 715 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DGCR2P98153 550 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FAM53BQ14153 422 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CDK5R1Q15078 307 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ALG10BQ5I7T1 473 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LYPD4Q6UWN0 246 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CREB3L2Q70SY1 520 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FRMD1Q8N878 549 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR11H7Q8NGC8 314 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 THAP4Q8WY91 577 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HYLS1Q96M11 299 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LMF2Q9BU23 707 aaKnown RBP14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TRIM2Q9C040 744 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 EVA1AQ9H8M9 152 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NUDT15Q9NV35 164 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CLEC4AQ9UMR7 237 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 C2orf74A8MZ97 194 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TNFRSF10CO14798 259 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TCRBP04435 133 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLC35E2P0CK97 266 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GDI2P50395 445 aaKnown RBP14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MMP15P51511 669 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RAB38P57729 211 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 PPP1CAP62136 330 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms