RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 LRRC56Q8IYG6 542 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 TP53I13Q8NBR0 393 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 OR10K1Q8NGX5 313 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ELP4Q96EB1 424 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ATXN7L1Q9ULK2 861 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 U3KQ87 197 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 OR1D4P47884 311 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 EVX1P49640 407 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 DPTQ07507 201 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 LPAL2Q16609 132 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 GPR155Q7Z3F1 870 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 NEURL3Q96EH8 262 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 RBP7Q96R05 134 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 TAS2R8Q9NYW2 309 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 CDC14CA4D256 554 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ACOT7O00154 380 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TRAPPC6AO75865 159 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 FBXO45P0C2W1 286 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 PER3P56645 1201 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 SORDQ00796 357 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ARHGAP11AQ6P4F7 1023 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF546Q86UE3 836 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 RBM45Q8IUH3 476 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 FRMD1Q8N878 549 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 FGF14Q92915 247 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 SLC6A7Q99884 636 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 SEC22CQ9BRL7 303 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 OBP2AQ9NY56 170 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 C19orf25Q9UFG5 118 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TMPRSS11DO60235 418 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 GRK5P34947 590 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 CTXN1P60606 82 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 AANATQ16613 207 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 PGGHGQ32M88 737 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TMEM225Q6GV28 225 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 CCL4L1Q8NHW4 92 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 SLC7A13Q8TCU3 470 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ADOQ96SZ5 270 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 CNN2Q99439 309 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 UBL3O95164 117 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 UBL4AP11441 157 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 PPP3CBP16298 524 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 HSD11B1P28845 292 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 CD34P28906 385 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 S100A11P31949 105 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 PSMB10P40306 273 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 CSNK1EP49674 416 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 KCTD20Q7Z5Y7 419 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 OR6T1Q8NGN1 323 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ARL11Q969Q4 196 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 BPIFA2Q96DR5 249 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 MED20Q9H944 212 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TRABD2BA6NFA1 517 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 HYAL4Q2M3T9 481 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 FBXO42Q6P3S6 717 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF584Q8IVC4 421 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 RDH10Q8IZV5 341 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 SLC16A11Q8NCK7 471 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TMEM234Q8WY98 164 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 PTGES2Q9H7Z7 377 aa15.14■□□□□ 0.01
CCDC88B-209ENST00000494080 TRAV27A0A087WT01 109 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 LRIT2A6NDA9 550 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 AGPAT2O15120 278 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 TXNL1O43396 289 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 RAB3AP20336 220 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 ULK3Q6PHR2 472 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 TPRA1Q86W33 373 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF101Q8IZC7 436 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 SPNS1Q9H2V7 528 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 FTSJ1Q9UET6 329 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 LINC01565O15544 149 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 LCMT2O60294 686 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 FOSL2P15408 326 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF20P17024 532 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 GABRB1P18505 474 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 ITGB8P26012 769 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 YPEL5P62699 121 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 CHRDL2Q6WN34 429 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 CMKLR1Q99788 373 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 OR52D1Q9H346 318 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 RGCCQ9H4X1 137 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 ABRACLQ9P1F3 81 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 SCGB1D2O95969 90 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 CLDN12P56749 244 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 FABP5Q01469 135 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 GBX1Q14549 363 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 CDNFQ49AH0 187 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 MRPL2Q5T653 305 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 TMEM164Q5U3C3 297 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 LEG1Q6P5S2 330 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 FCRLAQ7L513 359 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 PRSS45Q7RTY3 260 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 CALHM3Q86XJ0 350 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 MCCC2Q9HCC0 563 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 LRIT1Q9P2V4 623 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 RARRES3Q9UL19 164 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 IER3IP1Q9Y5U9 82 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 TRIOBPQ9H2D6 2365 aa15.13■□□□□ 0.01
CCDC88B-209ENST00000494080 FUT1P19526 365 aa15.12■□□□□ 0.01
CCDC88B-209ENST00000494080 PGCP20142 388 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms