RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PIF1Q9H611 641 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 MOV10Q9HCE1 1003 aaKnown RBP7.12□□□□□ -1.27
USP39-216ENST00000490193 EXOSC3Q9NQT5 275 aaKnown RBP7.12□□□□□ -1.27
USP39-216ENST00000490193 ATAD3AQ9NVI7 634 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 OXSMQ9NWU1 459 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 PGPEP1Q9NXJ5 209 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 TMEM181Q9P2C4 612 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 PSMC3IPQ9P2W1 217 aaPredicted RBP7.12□□□□□ -1.27
USP39-216ENST00000490193 CRNNQ9UBG3 495 aaPredicted RBP7.12□□□□□ -1.27
USP39-216ENST00000490193 PCDHGB4Q9UN71 923 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 SLC35A3Q9Y2D2 325 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 PCDHB14Q9Y5E9 798 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 DNAJC15Q9Y5T4 150 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 TGP01266 2768 aa7.12□□□□□ -1.27
USP39-216ENST00000490193 ARPC4-TTLL3A0A0A6YYG9 625 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 TMEM89A2RUT3 159 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 ZNF208O43345 1280 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 LYPLA1O75608 230 aaPredicted RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 CYP7B1O75881 506 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 SNUPNO95149 360 aaKnown RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 SLU7O95391 586 aaKnown RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 C6orf47O95873 294 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 CHEK2O96017 543 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 IGLV1-44P01699 117 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 CRYAAP02489 173 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 FGF4P08620 206 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 OR4A8P0C604 315 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 LINC00032P0C843 101 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 DAOP14920 347 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MAPK1P28482 360 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 HTR3AP46098 478 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MAP2K6P52564 334 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 OR2B6P58173 313 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 SLC35A1P78382 337 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 NAAAQ02083 359 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 POU3F1Q03052 451 aaPredicted RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 PLAURQ03405 335 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 GPR68Q15743 365 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MAPK14Q16539 360 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 SPDYE7PQ495Y7 208 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 HIKESHIQ53FT3 197 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 EMBQ6PCB8 327 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 PAQR6Q6TCH4 344 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 TRMT10CQ7L0Y3 403 aaKnown RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 SPATA19Q7Z5L4 167 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 ABHD12BQ7Z5M8 362 aaPredicted RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 RIMKLAQ8IXN7 391 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 FAM169BQ8N8A8 192 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 ZIC4Q8N9L1 334 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 NUP37Q8NFH4 326 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 OR4F15Q8NGB8 312 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MIPOL1Q8TD10 442 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MAGEE2Q8TD90 523 aaPredicted RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 PMM1Q92871 262 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 DOK1Q99704 481 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 KCNS3Q9BQ31 491 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 NAA11Q9BSU3 229 aaPredicted RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 SF3B5Q9BWJ5 86 aaKnown RBP7.11□□□□□ -1.27
USP39-216ENST00000490193 OR11A1Q9GZK7 315 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 ZNF442Q9H7R0 627 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 POLE3Q9NRF9 147 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 MKLN1Q9UL63 735 aa7.11□□□□□ -1.27
USP39-216ENST00000490193 B4DSR2 109 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 FAM157AC9JC47 383 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 FAAHO00519 579 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 KLF11O14901 512 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 RIPK2O43353 540 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 BCAS1O75363 584 aaPredicted RBP7.1□□□□□ -1.27
USP39-216ENST00000490193 IGKV3-15P01624 115 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 ERCC1P07992 297 aaPredicted RBP7.1□□□□□ -1.27
USP39-216ENST00000490193 IGFBP1P08833 259 aaPredicted RBP7.1□□□□□ -1.27
USP39-216ENST00000490193 CECR9P0C854 216 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 IMPDH2P12268 514 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 CPA3P15088 417 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 MATN1P21941 496 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 ARFIP2P53365 341 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 HBA1P69905 142 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 SCGB2A2Q13296 93 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 PTGR1Q14914 329 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 UGT3A2Q3SY77 523 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 TBRG1Q3YBR2 411 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 GALNTL6Q49A17 601 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 XKR7Q5GH72 579 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 ANKRD16Q6P6B7 361 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 SYT10Q6XYQ8 523 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 USP43Q70EL4 1123 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 C3orf56Q8N813 242 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 OR1K1Q8NGR3 316 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 OR5AK3PQ8NH89 298 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 ZNF563Q8TA94 476 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 FAM216AQ8WUB2 273 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 TWIST2Q8WVJ9 160 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 WDR60Q8WVS4 1066 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 IFT81Q8WYA0 676 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 DDIT4LQ96D03 193 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 PPP3R2Q96LZ3 170 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 SNX18Q96RF0 628 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 PRPF18Q99633 342 aaKnown RBP7.1□□□□□ -1.27
USP39-216ENST00000490193 GRPEL1Q9HAV7 217 aa7.1□□□□□ -1.27
USP39-216ENST00000490193 EXD2Q9NVH0 621 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms