RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PDCD11Q14690 1871 aaKnown RBP13.52□□□□□ -0.24
HDAC6-220ENST00000477528 TMEM164Q5U3C3 297 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 SLC25A24Q6NUK1 477 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 SUN5Q8TC36 379 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 APH1BQ8WW43 257 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 CPNE2Q96FN4 548 aaPredicted RBP13.52□□□□□ -0.24
HDAC6-220ENST00000477528 C11orf54Q9H0W9 315 aaPredicted RBP13.52□□□□□ -0.24
HDAC6-220ENST00000477528 MEMO1Q9Y316 297 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 NOX1Q9Y5S8 564 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 KCNE3Q9Y6H6 103 aa13.52□□□□□ -0.24
HDAC6-220ENST00000477528 TRAV18A0A075B6X5 111 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 SURF4O15260 269 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 UTS2O95399 124 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 PGAM2P15259 253 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 CD27P26842 260 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 PTPN6P29350 595 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 HSD11B2P80365 405 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 GPR50Q13585 617 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 TPBGQ13641 420 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 MLF2Q15773 248 aaPredicted RBP13.52□□□□□ -0.25
HDAC6-220ENST00000477528 DEDD2Q8WXF8 326 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF576Q9H609 170 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 NPIPA2E9PIF3 369 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 NPIPA3F8WFD2 350 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 CSTBP04080 98 aaKnown RBP13.52□□□□□ -0.25
HDAC6-220ENST00000477528 ST6GAL1P15907 406 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 GALEQ14376 348 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 SGCAQ16586 387 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 SHISA6Q6ZSJ9 500 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 ARL14Q8N4G2 192 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 SYNPRQ8TBG9 265 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 BRIX1Q8TDN6 353 aaKnown RBP13.52□□□□□ -0.25
HDAC6-220ENST00000477528 CRB3Q9BUF7 120 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 NRIP3Q9NQ35 241 aa13.52□□□□□ -0.25
HDAC6-220ENST00000477528 SIRT3Q9NTG7 399 aaPredicted RBP13.52□□□□□ -0.25
HDAC6-220ENST00000477528 LOC100509620A0A075B734 347 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 C5orf67F2Z3F1 127 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SLC16A7O60669 478 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PRAF2O60831 178 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SLC2A10O95528 541 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ATAD3CQ5T2N8 411 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PDSS1Q5T2R2 415 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 CARD17Q5XLA6 110 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 NIPAL3Q6P499 406 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF704Q6ZNC4 412 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 UEVLDQ8IX04 471 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SP7Q8TDD2 431 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PRDM9Q9NQV7 894 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 OR7A10O76100 309 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 TOXO94900 526 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 KDM4BO94953 1096 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PRSS3P35030 304 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 RACK1P63244 317 aaKnown RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 CDC20Q12834 499 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 CHAF1BQ13112 559 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SLC35D3Q5M8T2 416 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PLCZ1Q86YW0 608 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 THAP6Q8TBB0 222 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SENP5Q96HI0 755 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 MNTQ99583 582 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF717Q9BY31 904 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 OR51J1Q9H342 316 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 CD14P08571 375 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 CXCL12P48061 93 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 SFTPA1Q8IWL2 248 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 LNX2Q8N448 690 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ZSWIM8A7E2V4 1837 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF878C9JN71 531 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 OR8G3PP0DMU2 310 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 METTL11BQ5VVY1 283 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 TMEM205Q6UW68 189 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF767PQ75MW2 155 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ASB17Q8WXJ9 295 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 PHYHIPQ92561 330 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 ARHGAP9Q9BRR9 750 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 VDAC3Q9Y277 283 aa13.51□□□□□ -0.25
HDAC6-220ENST00000477528 YARS2Q9Y2Z4 477 aaKnown RBP13.51□□□□□ -0.25
HDAC6-220ENST00000477528 BRINP1O60477 761 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 TRAPPC6AO75865 159 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 RAB40ALP0C0E4 278 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 SERPINA12Q8IW75 414 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 RAB40AQ8WXH6 277 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 FAM46BQ96A09 425 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 HIST1H2AAQ96QV6 131 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 RBM7Q9Y580 266 aaKnown RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 NPFFR2Q9Y5X5 522 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 TMEM72A0PK05 275 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 NSA2O95478 260 aaKnown RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 SNRPBP14678 240 aaKnown RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 CSNK1EP49674 416 aaKnown RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF84P51523 738 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 BDH1Q02338 343 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 UBE2NLQ5JXB2 153 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 BCL2L14Q9BZR8 327 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 CHMP1AQ9HD42 196 aaPredicted RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 ZFC3H1O60293 1989 aaKnown RBP13.5□□□□□ -0.25
HDAC6-220ENST00000477528 A0A0X1KG70 313 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 OR2AT4A6NND4 320 aa13.5□□□□□ -0.25
HDAC6-220ENST00000477528 I3L521 148 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms