RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 C1orf216Q8TAB5 229 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 NUBPLQ8TB37 319 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TM9SF2Q99805 663 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 WDR54Q9H977 334 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 CHRNA9Q9UGM1 479 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 DAPK2Q9UIK4 370 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TMEFF2Q9UIK5 374 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 A6NHS1 94 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 CENPXA8MT69 81 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PDCD5O14737 125 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PHYHO14832 338 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 IDH3BO43837 385 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 IFI6P09912 130 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 FUT4P22083 530 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 GRPRP30550 384 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SUMO3P55854 103 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 VBP1P61758 197 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SNRPGP62308 76 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SSPNQ14714 243 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 STPG1Q5TH74 334 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF57Q68EA5 555 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ATCAYQ86WG3 371 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 THRSPQ92748 146 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SLC35B4Q969S0 331 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 MYOTQ9UBF9 498 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF639Q9UID6 485 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PCDHGB6Q9Y5F9 930 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ALPK3Q96L96 1907 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 CKAP5Q14008 2032 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 MAP3K8P41279 467 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SLC6A9P48067 706 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 C17orf82Q86X59 251 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 GPR137CQ8N3F9 429 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SYT14Q8NB59 555 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 OR5J2Q8NH18 312 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 LGALS12Q96DT0 336 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 KLHL15Q96M94 604 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SH3GL3Q99963 347 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 RNF121Q9H920 327 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 MCCC2Q9HCC0 563 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ABCB10Q9NRK6 738 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PTPRSQ13332 1948 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ANXA2P2A6NMY6 339 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ALG1L2C9J202 215 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 CLDN25C9JDP6 229 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 KHDRBS3O75525 346 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ANXA2P07355 339 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 FKBP2P26885 142 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 GLO1Q04760 184 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 GFOD2Q3B7J2 385 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SIMC1Q8NDZ2 872 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 SNIP1Q8TAD8 396 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PHOX2BQ99453 314 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 PIGQQ9BRB3 760 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ALG8Q9BVK2 526 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ELL3Q9HB65 397 aaPredicted RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ACOT13Q9NPJ3 140 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 DNAJB12Q9NXW2 375 aaKnown RBP10.61□□□□□ -0.71
VPS4A-201ENST00000254950 HEATR5BQ9P2D3 2071 aa10.61□□□□□ -0.71
VPS4A-201ENST00000254950 ARGFXA6NJG6 315 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CDRT1O95170 752 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 IGFBP1P08833 259 aaPredicted RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 H2BFMP0C1H6 154 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ATP1A4Q13733 1029 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 TRAM1Q15629 374 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 DDI2Q5TDH0 399 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 NXNL2Q5VZ03 156 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ALKBH2Q6NS38 261 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SLC15A4Q8N697 577 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 TMEM178AQ8NBL3 297 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 DIRAS2Q96HU8 199 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF582Q96NG8 517 aaPredicted RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 PITX2Q99697 317 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SEMA4CQ9C0C4 833 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 FN3KQ9H479 309 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 GMEB1Q9Y692 573 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ARID1BQ8NFD5 2236 aaPredicted RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SPAARA0A1B0GVQ0 90 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 LOC110117498-PIK3R3F6TDL0 507 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 PRKYO43930 277 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CYC1P08574 325 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CT45A8P0DMV1 189 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CT45A9P0DMV2 189 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 EPHA2P29317 976 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 OR12D2P58182 307 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SLC35A1P78382 337 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 PYDC2Q56P42 97 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CT45A2Q5DJT8 189 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SLC18B1Q6NT16 456 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ACSM5Q6NUN0 579 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 C3orf33Q6P1S2 294 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 DND1Q8IYX4 353 aaKnown RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CT55Q8WUE5 264 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 LANCL2Q9NS86 450 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 LRFN1Q9P244 771 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 UPB1Q9UBR1 384 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 MCTS1Q9ULC4 181 aaKnown RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 KLRC4-KLRK1H3BQV0 150 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 TNFRSF10AO00220 468 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SLC16A7O60669 478 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms