RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LOC102723996A0A087X1L8 192 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 FAM183AA6NL82 134 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 AGRPO00253 132 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 RPL4P36578 427 aaKnown RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 HTR3AP46098 478 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 CAPZA2P47755 286 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 ENTPD1P49961 510 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 SUMO3P55854 103 aaPredicted RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 TPBGQ13641 420 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 PLA2G2CQ5R387 149 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 ZNF362Q5T0B9 420 aaPredicted RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 C5orf46Q6UWT4 87 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 TMPRSS11AQ6ZMR5 421 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 PHC2Q8IXK0 858 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 CACTIN-AS1Q8N1I8 211 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 B4GALNT2Q8NHY0 566 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 PTP4A1Q93096 173 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 NACC2Q96BF6 587 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 SH3YL1Q96HL8 342 aaPredicted RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 SECISBP2Q96T21 854 aaKnown RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 TEAD3Q99594 435 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 CMKLR1Q99788 373 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 ARHGAP9Q9BRR9 750 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 MMP27Q9H306 513 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 MMP25Q9NPA2 562 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 RYDENQ9NUL5 291 aaKnown RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 ERVK13-1Q9NX77 482 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 SLC39A1Q9NY26 324 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 SSR3Q9UNL2 185 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 HIF3AQ9Y2N7 669 aa12.94□□□□□ -0.34
LIG3-205ENST00000585941 CAB39Q9Y376 341 aaPredicted RBP12.94□□□□□ -0.34
LIG3-205ENST00000585941 J3QRE1 110 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 AKAP8O43823 692 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 NUDT14O95848 222 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SLC2A5P22732 501 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 MST1P26927 711 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SOX6P35712 828 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SOX3P41225 446 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 BMXP51813 675 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 RAB15P59190 212 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 BDH1Q02338 343 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 LGALS3BPQ08380 585 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 C17orf67Q0P5P2 114 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 CRMP1Q14194 572 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ZNF846Q147U1 533 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 LCN1P1Q5VSP4 162 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 PAQR6Q6TCH4 344 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SLC15A4Q8N697 577 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 C10orf53Q8N6V4 93 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 OR4F15Q8NGB8 312 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SLC22A8Q8TCC7 542 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 TMEM234Q8WY98 164 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 UFD1Q92890 307 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 MR1Q95460 341 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 RNF31Q96EP0 1072 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 PHOX2BQ99453 314 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SH3GL3Q99963 347 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ULBP3Q9BZM4 244 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 STRADBQ9C0K7 418 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 WDR12Q9GZL7 423 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 SLIRPQ9GZT3 109 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 SMOC1Q9H4F8 434 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 FKRPQ9H9S5 495 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 NRIP3Q9NQ35 241 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ZNF229Q9UJW7 825 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SPIN1Q9Y657 262 aaPredicted RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 USP34Q70CQ2 3546 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 CLDN25C9JDP6 229 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 IMPA2O14732 288 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SCO2O43819 266 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 SLC25A12O75746 678 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 APOL3O95236 402 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 HIST1H2ABP04908 130 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 POLR2HP52434 150 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 FOXL2P58012 376 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 RPS7P62081 194 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 ACTC1P68032 377 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ACTA1P68133 377 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 KLHL12Q53G59 568 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 DESI1Q6ICB0 168 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 LCN10Q6JVE6 187 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 HIST3H2AQ7L7L0 130 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 GRINAQ7Z429 371 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 LRRC17Q8N6Y2 441 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 FAM98AQ8NCA5 519 aaKnown RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 ZNF485Q8NCK3 441 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 OR51G2Q8NGK0 314 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 MCFD2Q8NI22 146 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ATOH1Q92858 354 aaPredicted RBP12.93□□□□□ -0.34
LIG3-205ENST00000585941 HIST1H2ACQ93077 130 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 DEPDC7Q96QD5 511 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 COQ7Q99807 217 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 ZPBPQ9BS86 351 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 CENPOQ9BU64 300 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 RTN4RQ9BZR6 473 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 IER3IP1Q9Y5U9 82 aa12.93□□□□□ -0.34
LIG3-205ENST00000585941 RALGAPA1Q6GYQ0 2036 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 TRAV36DV7A0A075B6V5 113 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 LNP1A1A4G5 178 aa12.92□□□□□ -0.34
LIG3-205ENST00000585941 CCDC182A6NF36 153 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms