RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	TMEM33	P57088	247 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	SPOCK1	Q08629	439 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	CSTF3	Q12996	717 aa	Known RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	TGFBI	Q15582	683 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	EFNB3	Q15768	340 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF239	Q16600	458 aa	Known RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	SH2D4B	Q5SQS7	431 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	LGSN	Q5TDP6	509 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	RBMS3	Q6XE24	437 aa	Known RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	FCRLA	Q7L513	359 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC46A3	Q7Z3Q1	461 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	SYCE1	Q8N0S2	351 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	BPIFB2	Q8N4F0	458 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	WDR31	Q8NA23	367 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	TOR1AIP2	Q8NFQ8	470 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR52N5	Q8NH56	324 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR51F2	Q8NH61	342 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	WDR60	Q8WVS4	1066 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF75CP	Q92670	426 aa	Predicted RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	MARS2	Q96GW9	593 aa	Known RBP	4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	HES6	Q96HZ4	224 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	VSTM2L	Q96N03	204 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF681	Q96N22	645 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	DOK1	Q99704	481 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC6A7	Q99884	636 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	CTNNAL1	Q9UBT7	734 aa		4.06	□□□□□ -1.76
SCFD1-223	ENST00000557076	LOC105371242	A0A075B767	164 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GOLGA6L10	A0A0M3HER8	536 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CIB4	A0PJX0	185 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	NCF1B	A6NI72	391 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	NCF1C	A8MVU1	366 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	VSTM5	A8MXK1	200 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076		H0YIV9	168 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076		J3QLI3	93 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076		M0R1B8	84 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	PIN1P1	O15428	100 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	SCO2	O43819	266 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	PLOD3	O60568	738 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	KERA	O60938	352 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GUCY1B2	O75343	617 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLU7	O95391	586 aa	Known RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TTC4	O95801	387 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TF	P02787	698 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	KLK1	P06870	262 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	NUDT17	P0C025	328 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	NCF1	P14598	390 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ADRA2C	P18825	462 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ME2	P23368	584 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	PAX7	P23759	505 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GATA3	P23771	443 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GNAL	P38405	381 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	FEN1	P39748	380 aa	Known RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	EIF1	P41567	113 aa	Known RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	HSPA7	P48741	367 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	RAB10	P61026	200 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	LMO4	P61968	165 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	MYBPC1	Q00872	1141 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	POU3F1	Q03052	451 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CCNI	Q14094	377 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TSN	Q15631	228 aa	Known RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TRIP10	Q15642	601 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ADIPOQ	Q15848	244 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TEDDM1	Q5T9Z0	273 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	LIPJ	Q5W064	366 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	FBXW9	Q5XUX1	488 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GRHL2	Q6ISB3	625 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	FAM45BP	Q6NSW5	357 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ACSM5	Q6NUN0	579 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC48A1	Q6P1K1	146 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	FRA10AC1	Q70Z53	315 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GSTA5	Q7RTV2	222 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GALNT5	Q7Z7M9	940 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	MARCH3	Q86UD3	253 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CNGA4	Q8IV77	575 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF100	Q8IYN0	542 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR4N2	Q8NGD1	307 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CLDND2	Q8NHS1	167 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	FAM45A	Q8TCE6	357 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ZNF675	Q8TD23	568 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ANKRD49	Q8WVL7	239 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	STON2	Q8WXE9	905 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ESAM	Q96AP7	390 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	EFHD2	Q96C19	240 aa	Predicted RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	KLHL15	Q96M94	604 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CCT8L2	Q96SF2	557 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	MTERF1	Q99551	399 aa	Known RBP	4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	GPA33	Q99795	319 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	CITED1	Q99966	193 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TMEM79	Q9BSE2	394 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	ADI1	Q9BV57	179 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	C1QTNF6	Q9BXI9	259 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	DERL2	Q9GZP9	239 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	TSPY26P	Q9H489	355 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	G6PC2	Q9NQR9	355 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	KLHL9	Q9P2J3	617 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	MOK	Q9UQ07	419 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	OR10H1	Q9Y4A9	318 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	PPIAL4A	Q9Y536	164 aa		4.05	□□□□□ -1.76
SCFD1-223	ENST00000557076	COL7A1	Q02388	2944 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms